params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,9202,AF053589.1,1,sp|AF053589.1|AF053589 Nosema locustae U2 snRNA gene; complete sequence.,0,0,90,279,90.09,CCACCUCUCAAAGCUCAUAGCUUUGAUCAAGUGUAGUAUCUGUUCUUGUCAGUGUGACAGCUGACAAACUAGCUCCUUGGAGCUAGAAUAUGCUGGUGUGUGUGUGGAUGCUUUGACAGGCUUGCUUGUAGGGGCCAUGCACACACCAGGCAGACUCCCGGAAGUUGUUCCGUCCGGAGCUGCACUUUUU,AF053589.1/90-279,90-279,0,189,AF053589.1/90-279
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39740,AL683874.1,1,sp|AL683874.1|AFA14E5 Aspergillus fumigatus BAC  AfA14E5.,1,1,16263,16072,134.05,UCAGCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCUCUGAAAGUGUUCUAAGGAACACAACAUUGAUUAAUCUCAUUUUUGGAUCUCGUGGCAAGGCCUCUGUGCUUGCGCAUGCCUUGCCACACAGUGUCAUUGGGCUUACACUACCCCCAAUUGACGCGACCCUU,AL683874.1/16263-16072,16263-16072,0,191,AL683874.1/16263-16072
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58704,AL590446.1,1,sp|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora),0,2,168546,168713,51.97,CCACCUCUCAAGCCAAUCGGCUUUGAUCAAGUGUAGUAUCUGUUCUUGCCAGUGUAAGAACUGGCAUUAUCCGUCAGGAUAAACUCACGAAUUUUUGGGCGGCGAGAUGAGGCAGCGGAGCUUGAGCGCUUGCGUUUCGGUUGCUCUGCCAGAGGCUCGCGGGCUCCC,AL590446.1/168546-168713,168546-168713,0,167,AL590446.1/168546-168713
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64831,BX294012.1,1,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10,1,3,95728,95534,130.05,UUAGCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCUCUGAAAGUACUCUACGGAGUACAAUCGUGAUUAUUCUAAUUUUUGUAACGCGGUCGGUUUUCCUCUAGGCUUGCCUAUGAUUACCUUCCACUGUGUCCCUGGUAUUACACUGCCUCCAGGCGACGCGAACUACU,BX294012.1/95728-95534,95728-95534,0,194,BX294012.1/95728-95534
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,66985,Y15811.1,1,sp|Y15811.1|PRY15811 Xanthophyllomyces dendrorhous idi gene,1,4,2889,2708,107.15,AUCCUCUCUGGCCUUUUGGCUUAGAUCAUGUGUAGUAUCUGUUCUUAUAAGUUUAACCACUUAUAUGGGUCCACCGGACCCAUCUGGUUUACUUCUUUUUGCCUUGCCCGUCCGGCCAUCCUCUGCUUGCACGACGGCCGGACACGAUGACCUUGCCACUGCACUGCCGGCUUGUGUUGUCA,Y15811.1/2889-2708,2889-2708,0,181,Y15811.1/2889-2708
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,72263,M14625.1,1,sp|M14625.1|SCUGLSR1 Yeast (S.cerevisiae) LSR1 gene encoding the yeast homolog of vertebrate U2 small nuclear RNA.,0,5,332,488,91.82,AUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGACCUCAAUGAGGCUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGGCACCCAAAAUAAUAAAAUGGACGGGAAGAGACUUUUUAAGC,M14625.1/332-488 Z36099.1/2637-2481 Z36100.1/1808-1652,332-488,0,156,M14625.1/332-488
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,72692,Z36099.1,1,sp|Z36099.1|SCYBR230C S.cerevisiae chromosome II reading frame ORF YBR230c,1,6,2637,2481,91.82,AUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGACCUCAAUGAGGCUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGGCACCCAAAAUAAUAAAAUGGACGGGAAGAGACUUUUUAAGC,M14625.1/332-488 Z36099.1/2637-2481 Z36100.1/1808-1652,2637-2481,0,156,Z36099.1/2637-2481
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,72693,Z36100.1,1,sp|Z36100.1|SCYBR231C S.cerevisiae chromosome II reading frame ORF YBR231c,1,7,1808,1652,91.82,AUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGACCUCAAUGAGGCUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGGCACCCAAAAUAAUAAAAUGGACGGGAAGAGACUUUUUAAGC,M14625.1/332-488 Z36099.1/2637-2481 Z36100.1/1808-1652,1808-1652,0,156,Z36100.1/1808-1652
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,76404,AL132798.2,1,sp|AL132798.2|SPAC222 S.pombe chromosome I cosmid c222.,1,8,16817,16627,158.53,AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCGCUGAAAUCACCUCACUGAGGUGUUUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAAGCCUCUGGCUUGCUAUGCUUUCCGACACUGGUGUUCUUGCUAUUGCACUACUGGCAAGCGACGCCGAAUCUUC,AL132798.2/16817-16627 X55772.1/223-413,16817-16627,0,190,AL132798.2/16817-16627
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77618,X55772.1,1,sp|X55772.1|SPSNU2G S. pombe snu2 gene for U2 snRNA,0,9,223,413,158.53,AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCGCUGAAAUCACCUCACUGAGGUGUUUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAAGCCUCUGGCUUGCUAUGCUUUCCGACACUGGUGUUCUUGCUAUUGCACUACUGGCAAGCGACGCCGAAUCUUC,AL132798.2/16817-16627 X55772.1/223-413,223-413,0,190,X55772.1/223-413
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,77697,M23361.1,1,sp|M23361.1|SPU2SNRNA Schizosaccharomyces pombe U2 small nuclear RNA; complete cds.,0,10,1,186,147.78,AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCGCUGAAAUCACCUCACUGAGGUGUUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAAGCCUCUGGCUUGCUAUGCUUUCCGACACUGGUGUUCUUGCUAUUGCACUUACUGGCAAGCGACGCCGAA,M23361.1/1-186,1-186,0,185,M23361.1/1-186
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5158,AC005719.2,1,sp|AC005719.2|AC005719 Drosophila melanogaster; chromosome 2L; region 38A5-38B4; BAC clone BACR48M05; complete sequence.,0,11,126731,126922,186.61,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,X04246.1/87-278 AC005719.2/126731-126922 X04245.1/243-434 AE003664.2/83770-83579,129890-129700 126731-126922,0,191,AC005719.2/126731-126922
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5158,AC005719.2,1,sp|AC005719.2|AC005719 Drosophila melanogaster; chromosome 2L; region 38A5-38B4; BAC clone BACR48M05; complete sequence.,1,12,129890,129700,177.57,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AC005719.2/129890-129700 AE003664.2/80611-80801,129890-129700 126731-126922,0,190,AC005719.2/129890-129700
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5690,AC009200.6,1,sp|AC009200.6|AC009200 Drosophila melanogaster; chromosome 2L; region 34A-34E; BAC clone BACR32O12; complete sequence.,0,13,21011,21202,185.56,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AC009340.4/1295-1104 AC009200.6/21011-21202 AE003639.3/91395-91204,17288-17097 21011-21202,0,191,AC009200.6/21011-21202
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5690,AC009200.6,1,sp|AC009200.6|AC009200 Drosophila melanogaster; chromosome 2L; region 34A-34E; BAC clone BACR32O12; complete sequence.,1,14,17288,17097,185.79,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AE003639.3/95118-95309 AC009340.4/5018-5209 AE003639.3/123840-123649 AC009200.6/17288-17097 AC009340.4/33740-33549,17288-17097 21011-21202,0,191,AC009200.6/17288-17097
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5714,AC009340.4,1,sp|AC009340.4|AC009340 Drosophila melanogaster; chromosome 2L; region 34A-34E; BAC clone BACR04E19; complete sequence.,0,15,5018,5209,185.79,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AE003639.3/95118-95309 AC009340.4/5018-5209 AE003639.3/123840-123649 AC009200.6/17288-17097 AC009340.4/33740-33549,5018-5209 1295-1104 33740-33549,0,191,AC009340.4/5018-5209
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5714,AC009340.4,1,sp|AC009340.4|AC009340 Drosophila melanogaster; chromosome 2L; region 34A-34E; BAC clone BACR04E19; complete sequence.,1,16,33740,33549,185.79,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AE003639.3/95118-95309 AC009340.4/5018-5209 AE003639.3/123840-123649 AC009200.6/17288-17097 AC009340.4/33740-33549,5018-5209 1295-1104 33740-33549,0,191,AC009340.4/33740-33549
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5714,AC009340.4,1,sp|AC009340.4|AC009340 Drosophila melanogaster; chromosome 2L; region 34A-34E; BAC clone BACR04E19; complete sequence.,1,17,1295,1104,185.56,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AC009340.4/1295-1104 AC009200.6/21011-21202 AE003639.3/91395-91204,5018-5209 1295-1104 33740-33549,0,191,AC009340.4/1295-1104
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,5917,AC010707.16,1,sp|AC010707.16|AC010707 Drosophila melanogaster; chromosome X; region 14B-14B; BAC clone BACR06P10; complete sequence.,0,18,95974,96165,186.61,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGACUUCGGCCCAAC,AC010707.16/95974-96165 AE003501.3/245649-245840,95974-96165,0,191,AC010707.16/95974-96165
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6392,AC084507.1,1,sp|AC084507.1|AC084507 Caenorhabditis briggsae cosmid G15B09; complete sequence.,1,19,7022,6873,42.37,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACGCUCGAAGGAAUAGAAUUGAACAGGAUCGCACAUUGAUAAAAAAGAAAAGCAUUGAAACGAACCAAAUUCUUUUUCUCC,AC084507.1/7022-6873,7022-6873,0,149,AC084507.1/7022-6873
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6483,AC084598.1,1,sp|AC084598.1|AC084598 Caenorhabditis briggsae cosmid G42J05; complete sequence.,0,20,10649,10839,157.15,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUGCACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGAAAGACUCGGGGCUUGCUCCGACUUUCCAAGGGUCGUCCCGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCU,AC084598.1/10649-10839,10649-10839,0,190,AC084598.1/10649-10839
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6955,AC116989.2,1,sp|AC116989.2|AC116989 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4; complete sequence.,0,21,3586,3793,35.08,AUCUUCUUGAAGCGUAAUAGCUUUAAUCAAGUGUAGUAUCUGUUCUAGAACGCUUAAAAUCGUUCUGCUAUCUAAGUGAUAGCUUUCGAAUUUAAUUUUAUUUUUUAUUCGAGGUUUUUAGAUGUUAUUAUUAUAAUAUCGGCUUGCCUUUAUUCAUUACAUCUAAAGUUGUAUUCCCUCUGUAUCGCACCAUUUCAGAGUCAAUAAA,AC116989.2/3586-3793,7570-7778 3586-3793,0,207,AC116989.2/3586-3793
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,6955,AC116989.2,1,sp|AC116989.2|AC116989 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4; complete sequence.,0,22,7570,7778,32.00,AUCUUCUUGAAGCGUAAUAGCUUUAAUCAAGUGUAGUAUCUGUUCUAGAACGCUUAAAAUCGUUCUGCUAUCUAAGUGGUAGCUUUCGAAUUUAAUUUUAUUUUUUAUUCGAGGUUUUUAGAUGUUAUUAUAAUAAUAUAGGCUUGCCUUUAUUCAUUACAUCUUAAGUUGUAUUCGCUCUGUAUCGCACCAUUUCAGAGUCAAUAAAA,AC116989.2/7570-7778,7570-7778 3586-3793,0,208,AC116989.2/7570-7778
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7010,AC137988.2,1,sp|AC137988.2|AC137988 Trypanosoma cruzi chromosome 3 clone cosmids 1o17; 1m17; 1b21; 2n11 strain Brener; complete sequence.,1,23,33725,33578,80.85,AUAUCUUCUCGGCCAUUUAGCUAAGAUCAAGUUUUCAAGCUGUUCUUAUCAGAUUAAUUCCUGAUAUGGGCUUCGUCCCAGGAAUAGAAACCGCUGAUCUCUCAAGUGUUCCUCCGGAGUUUCGCGUGUCCGGAUGGAGCGCUUCCUU,AC137988.2/33725-33578 X56456.1/243-390,33725-33578,0,147,AC137988.2/33725-33578
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7517,AE003501.3,1,sp|AE003501.3|AE003501 Drosophila melanogaster chromosome X section 53 of 74 of the complete sequence.,0,24,245649,245840,186.61,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGACUUCGGCCCAAC,AC010707.16/95974-96165 AE003501.3/245649-245840,245649-245840,0,191,AE003501.3/245649-245840
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7655,AE003639.3,1,sp|AE003639.3|AE003639 Drosophila melanogaster chromosome 2L section 48 of 83 of the complete sequence.,0,25,95118,95309,185.79,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AE003639.3/95118-95309 AC009340.4/5018-5209 AE003639.3/123840-123649 AC009200.6/17288-17097 AC009340.4/33740-33549,95118-95309 123840-123649 91395-91204,0,191,AE003639.3/95118-95309
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7655,AE003639.3,1,sp|AE003639.3|AE003639 Drosophila melanogaster chromosome 2L section 48 of 83 of the complete sequence.,1,26,123840,123649,185.79,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AE003639.3/95118-95309 AC009340.4/5018-5209 AE003639.3/123840-123649 AC009200.6/17288-17097 AC009340.4/33740-33549,95118-95309 123840-123649 91395-91204,0,191,AE003639.3/123840-123649
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7655,AE003639.3,1,sp|AE003639.3|AE003639 Drosophila melanogaster chromosome 2L section 48 of 83 of the complete sequence.,1,27,91395,91204,185.56,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AC009340.4/1295-1104 AC009200.6/21011-21202 AE003639.3/91395-91204,95118-95309 123840-123649 91395-91204,0,191,AE003639.3/91395-91204
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7680,AE003664.2,1,sp|AE003664.2|AE003664 Drosophila melanogaster chromosome 2L section 73 of 83 of the complete sequence.,0,28,80611,80801,177.57,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,AC005719.2/129890-129700 AE003664.2/80611-80801,83770-83579 80611-80801,0,190,AE003664.2/80611-80801
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7680,AE003664.2,1,sp|AE003664.2|AE003664 Drosophila melanogaster chromosome 2L section 73 of 83 of the complete sequence.,1,29,83770,83579,186.61,AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC,X04246.1/87-278 AC005719.2/126731-126922 X04245.1/243-434 AE003664.2/83770-83579,83770-83579 80611-80801,0,191,AE003664.2/83770-83579
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7889,AE014841.1,1,sp|AE014841.1|AE014841 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.,1,30,200154,199958,127.82,ACCCUUCUCGGCCUCUUGGCUAAGAUCAAUUUGUAGUACCUGUUCUUAUCAGCGUGAUAGCUGAUAUGGUCUCAAUAGAGGCCUUAUCAAUUUCACAAAAAUUUUUGAUAGGGGAAAGGAUAAUUUGAAGCUUGCUUCUUAUAACCUUUCGCGCGUUGCCUUACCCUUGCACUAAAGGUUUGUACAGUGCACCCUUA,AE014841.1/200154-199958,200154-199958,0,196,AE014841.1/200154-199958
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,7904,AE017170.1,1,sp|AE017170.1|AE017170 Trypanosoma brucei chromosome 2; section 4 of 4 of the complete sequence.,0,31,123503,123647,97.53,AUAUCUUCUCGGCUAUUUAGCUAAGAUCAAGUUAUUAAACUGUUCUUAUCAGAGUAACUCCUGAUACGGGCCUUUGGCCCAAGGAUCAAAACUGUUGGCUGUCCCGCGUUCUUCCGGGGUUCCACUUGUCCGGAUGGAGCGCGAC,AE017170.1/123503-123647,123503-123647,0,144,AE017170.1/123503-123647
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11713,AF045635.1,1,sp|AF045635.1|AF045635 Caenorhabditis elegans cosmid C05G6; complete sequence.,1,32,5423,5233,151.16,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCAAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCCUGGGAAGACUCGGGGCUUGCUUCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUUCUGCCGGGCUCGGCCCAGUCCCC,AF045635.1/5423-5233,5423-5233,0,190,AF045635.1/5423-5233
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,11928,AF047722.1,1,sp|AF047722.1|AF047722 Trypanosoma brucei rhodesiense adenylate kinase gene; complete cds; and U2 snRNA gene; complete sequence.,0,33,3099,3243,99.57,AUAUCUUCUCGGCUAUUUAGCUAAGAUCAAGUUAUUAAACUGUUCUUAUCAGAGUAACUCCUGAUACGGGCCUUUGGCCCAAGGAUCAAAACUGUUGCCUGUCCCGCGUUCUUCCGGGGUUCCACUUGUCCGGACGGAGCGCGAC,X04678.1/111-255 AF047722.1/3099-3243,3099-3243,0,144,AF047722.1/3099-3243
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,15491,AF095839.1,1,sp|AF095839.1|AF095839 Entosiphon sulcatum trans-spliced leader SL; 5S ribosomal RNA; U5 snRNA; U1 snRNA; and U2 snRNA genes; complete sequence.,1,34,1586,1389,209.32,AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUUUCUGAUAUAUCGGACACUGUCCGAUUGAGAAAUUAAACUAAUUUUUUGAUGGGGGCAAGGGGUUCCCCUCGUGCUUGCGCGAGUCCCUUGCCACGGGUUGCCCUGCUAUUGCACUACCGGCAGGCGCGGCCCAACCCAC,AF095839.1/1586-1389,1586-1389,0,197,AF095839.1/1586-1389
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16448,AF110878.1,1,sp|AF110878.1|AF110878 Tasmanipatus barretti U2 snRNA gene; partial sequence.,0,35,2,131,24.74,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCCCGCAAUUGUGGGCCAGAAUAUUAAACUGAUUUUUGGAAUUGGGUGGAGAGCUCGGGGCUUGCUCCACCUCCACCACGGGUUGGC,AF110878.1/2-131,2-131,0,129,AF110878.1/2-131
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16449,AF110879.1,1,sp|AF110879.1|AF110879 Oroperipatus corrodai U2 snRNA gene; partial sequence.,0,36,2,124,32.15,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCUCCCUAAUGGGGGCCAGAAUAUUAAACUGAUUUUUGGAAUUGGGUGGAGAGCUAGGGGCUUGCUCCCCCUCCGCCACC,AF110879.1/2-124,2-124,0,122,AF110879.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16452,AF110882.1,1,sp|AF110882.1|AF110882 Craterostigmus tasmanianus U2 snRNA gene; partial sequence.,0,37,2,133,33.17,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCCAUUGGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAUCAGGCGGGGUGUUUAGGGGCUUGCUCCACCCCCGCCACUGGUUGGC,AF110882.1/2-133,2-133,0,131,AF110882.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16453,AF110883.1,1,sp|AF110883.1|AF110883 Schizoribautia sp. U2 snRNA gene; partial sequence.,0,38,2,132,34.92,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCUCAUUGAGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACAGGUGGGGUGCUCGGGGCUUGCUCCACCCCCGCCACGGGUUGGC,AF110883.1/2-132,2-132,0,130,AF110883.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16454,AF110884.1,1,sp|AF110884.1|AF110884 Allothereua maculata U2 snRNA gene; partial sequence.,0,39,2,132,29.43,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACAGUCCCNAUUGGGGACCCAGAAUAUUAAACUGAUUUUUGGCAUUCGGCGGGGUGCUAGGGGCUUGCUCCACCCCCGCCACGAGUUGGC,AF110884.1/2-132,2-132,0,130,AF110884.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16455,AF110885.1,1,sp|AF110885.1|AF110885 Cormocephalus sp. U2 snRNA gene; partial sequence.,0,40,2,132,33.40,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGCCUCCAUUGGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAAUUGGCGGGGUGCUCGGGGCUUGCUCCACCCCUGCCACGGGUUGGC,AF110885.1/2-132,2-132,0,130,AF110885.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16456,AF110886.1,1,sp|AF110886.1|AF110886 Hanseniella sp. AM-1999 U2 snRNA gene; partial sequence.,0,41,2,132,21.06,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACAGUCCUCAUAGAGGGCUCAGUAUAUUAACCUGAUUUUUGAACUCUGGCGGAGUGAAAGGGGCUUGCUCCACCUCUGCCGCGGGUUGGC,AF110886.1/2-132,2-132,0,130,AF110886.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16457,AF110887.1,1,sp|AF110887.1|AF110887 Pauropodinae sp. U2 snRNA gene; partial sequence.,0,42,2,132,35.14,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCUCAUUGAGGGACCAGAAUAUUAAACUGAUUUUUGGAACUAGGCGGAAUGUUCGGGGCUUGCUCCACCUCUGCCGCGGGUUGGC,AF110887.1/2-132,2-132,0,130,AF110887.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16458,AF110888.1,1,sp|AF110888.1|AF110888 Epicyliosoma sp. AMcL-1999 U2 snRNA gene; partial sequence.,0,43,2,132,36.17,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCUCAUUGAGGGACCAGAAUAUUAAACUGAUUUUUGGAACUAGGCGGAGUGUUCGGGGCUUGCUCCACCUCUGCCACGGGUUGGC,AF110888.1/2-132,2-132,0,130,AF110888.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16459,AF110889.1,1,sp|AF110889.1|AF110889 Unixenus mjobergi U2 snRNA gene; partial sequence.,0,44,2,132,25.55,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUCUCUGAUACGCCCCCCAUUGGGGGGCCAGAUGAUUAAACUGGUUUUUGGAACAGGGCGGAGUGCUAGGGGCUUGCUCCACCUCUGCCACGGGUUGGC,AF110889.1/2-132,2-132,0,130,AF110889.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16462,AF110892.1,1,sp|AF110892.1|AF110892 Tricholepidion gretschi U2 snRNA gene; partial sequence.,0,45,2,132,27.46,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUGUGCAUUGCACAUCCAGAAUAUUAAACUGAUUUUUGGAUUUUGGCGGAGUGUUAGGGGCUUGCUCCACCUCUGCCGCGGGUUGGC,AF110892.1/2-132,2-132,0,130,AF110892.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16463,AF110893.1,1,sp|AF110893.1|AF110893 Allomachilis froggarti U2 snRNA gene; partial sequence.,0,46,2,132,33.25,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUCCUCAUCGAGGAUCCAGAAUAUUAAACUUAUUUUUGGAGAAUGACGGAGUGUUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGC,AF110893.1/2-132,2-132,0,130,AF110893.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16464,AF110894.1,1,sp|AF110894.1|AF110894 Atalophlebia sp. U2 snRNA gene; partial sequence.,0,47,2,132,29.48,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCUCAUUGCUGGACCAGAAUAUUAAACUGAUUUUUGGAAACAGCUGGAGUGCUAGGAGCUUGCUCCACCUCCGGCACGGGUUGGC,AF110894.1/2-132,2-132,0,130,AF110894.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16465,AF110895.1,1,sp|AF110895.1|AF110895 Lasionectes exleyi U2 snRNA gene; partial sequence.,0,48,2,132,31.32,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCUCCGCAUCGCGGAGCCAGAAUAUUAAACUGAUUUUUGAAACUAGGUGGGGUGUUCGGGGCUUGCUCCACCCCUGCCACGGGUUGGC,AF110895.1/2-132,2-132,0,130,AF110895.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16466,AF110896.1,1,sp|AF110896.1|AF110896 Derocheilocaris remanei U2 snRNA gene; partial sequence.,0,49,2,132,34.83,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACACUCCCCAUUGGGGAGUCAGAAUAUUAAACUGAUUUUUGUAACCUGACGGAGUGCUCGGGGCUUGCUCCACCUCUGUCGCGGGUUGGC,AF110896.1/2-132,2-132,0,130,AF110896.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16467,AF110897.1,1,sp|AF110897.1|AF110897 Nebalia sp. U2 snRNA gene; partial sequence.,0,50,2,132,37.14,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUCCCCAUGCGGGAUCAACGAUAUUAAACUGAUUUUUGGCCUUUGGCGAAGUGCUAGGAGCUUGCUCCACCUUUGCCGCGGAUCAGC,AF110897.1/2-132,2-132,0,130,AF110897.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16468,AF110898.1,1,sp|AF110898.1|AF110898 Triops australiensis U2 snRNA gene; partial sequence.,0,51,2,123,23.88,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUUCCCAUNGUGGAUCCAGAAUAUUAAACUGAUUUUUGGAAACUGGCGGAGUGCUGGGGCUUGCUCCACCUCCGCCGC,AF110898.1/2-123,2-123,0,121,AF110898.1/2-123
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16469,AF110899.1,1,sp|AF110899.1|AF110899 Branchianella sp. 2 U2 snRNA gene; partial sequence.,0,52,2,125,26.25,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCUAUAUGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACCGGGGGGAUGUCGGGGCUUGCUCCGCUCCCUCCACGC,AF110900.1/2-125 AF110899.1/2-125,2-125,0,123,AF110899.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16470,AF110900.1,1,sp|AF110900.1|AF110900 Branchianella sp. 3 U2 snRNA gene; partial sequence.,0,53,2,125,26.25,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCUAUAUGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACCGGGGGGAUGUCGGGGCUUGCUCCGCUCCCUCCACGC,AF110900.1/2-125 AF110899.1/2-125,2-125,0,123,AF110900.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16471,AF110901.1,1,sp|AF110901.1|AF110901 Kempina mikado U2 snRNA gene; partial sequence.,0,54,2,132,30.66,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCCAUGUGGGGCCUACGAUAUUAAUCUGAUUUUUGUACUUAGGCGAAGUGCUCGGGGCUUGCUCCACCUUUGCCACGGAUUGGC,AF110901.1/2-132,2-132,0,130,AF110901.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16472,AF110902.1,1,sp|AF110902.1|AF110902 Limulus polyphemus U2 snRNA gene; partial sequence.,0,55,2,124,41.02,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUUCCCAUUGGGGACCAUGAUAUUAAACUUAUUUUUGUGAGGCGGCGGGGUGCUUGGAGCUUGCUCCACUCCUGCCACG,AF110902.1/2-124,2-124,0,122,AF110902.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16474,AF110904.1,1,sp|AF110904.1|AF110904 Equitius sp. U2 snRNA gene; partial sequence.,0,56,2,123,39.02,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGCCCCCAUCGGGGGCCAAGAUAUUAAUCUUAUUUUUGUCAUGCGGCGGAGAGCUUGAGGCUUGCUUCACCUCCGCCAC,AF110904.1/2-123,2-123,0,121,AF110904.1/2-123
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16475,AF110905.1,1,sp|AF110905.1|AF110905 Lychas marmoreus U2 snRNA gene; partial sequence.,0,57,2,123,32.54,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCUCCAUCGGGGGCCAUGAUAUUAAACUGAUUUUUGGAAGGCGGCGGAGUGCUUGGAGCUUGCUCCACCUCUGCCAC,AF110905.1/2-123,2-123,0,121,AF110905.1/2-123
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,16476,AF110906.1,1,sp|AF110906.1|AF110906 Atrax sp. EBU-1999 U2 snRNA gene; partial sequence.,0,58,2,131,20.49,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUAAAUAUCUGAUACGGUCCCUAUAUGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACCGGGGGGAUGUCUGGGGCUUGCUCCGCUCCCUCCACGCGUUGGC,AF110906.1/2-131,2-131,0,129,AF110906.1/2-131
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23644,AF185197.1,1,sp|AF185197.1|AF185197 Idanthyrsus pennatus U2 small nuclear RNA; partial sequence.,0,59,2,124,36.51,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCAUUGGGGGACAUCGAUAUUAAACUGAUUUUUGGCACUGGGAGAAGAUGCAGGAGCUUGCUCCGACUUCUCCAC,AF185197.1/2-124,2-124,0,122,AF185197.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23645,AF185198.1,1,sp|AF185198.1|AF185198 Amphiglena terebro U2 small nuclear RNA; partial sequence.,0,60,2,133,28.77,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCAUUGNGUCACUACGAUAUUAAACUGAUUUUUAGAACUAGGAGGGGAUGCAGGAGCUUGCUCCGACCCCUCCACGGGUUGGCC,AF185198.1/2-133,2-133,0,131,AF185198.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23646,AF185199.1,1,sp|AF185199.1|AF185199 Galeolaria caespitosa U2 small nuclear RNA; partial sequence.,0,61,2,124,37.64,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAGGCUCAUCGAGUCUCUACGAUAUUAAACUGAUUUUUGGACUUAGGAGGGGUUUCUGGAGCUUGCUCCGAACCCUCCAC,AF185199.1/2-124,2-124,0,122,AF185199.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23647,AF185200.1,1,sp|AF185200.1|AF185200 Owenia fusiformis U2 small nuclear RNA; partial sequence.,0,62,2,133,37.83,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUGUCCAUUGGACAUCUUCGAUAUUAAACUGAUUUUUGUACCUGGGCGAAGUGUAAGGGGCUUGCUCCACCUUUGCCAUGGGUUGGCC,AF185200.1/2-133,2-133,0,131,AF185200.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23648,AF185201.1,1,sp|AF185201.1|AF185201 Lamellibrachia satsuma U2 small nuclear RNA; partial sequence.,0,63,2,124,36.37,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUCCCCACUGGGGAACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGAAGAUGCAGGAGCUUGCUCCGACUUCUCCAC,AF185201.1/2-124,2-124,0,122,AF185201.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23649,AF185202.1,1,sp|AF185202.1|AF185202 Glycera sp. AMW196835 U2 small nuclear RNA; partial sequence.,0,64,2,128,32.00,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGNACAUCGAUAUUAAACUGAUUUUUGGNCUUCGGCGAAGUGUCAGGAGCUUGCUCCGCCUUUGCCACGGGN,AF185202.1/2-128,2-128,0,126,AF185202.1/2-128
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23650,AF185203.1,1,sp|AF185203.1|AF185203 Dodecaceria sp. AMW23009 U2 small nuclear RNA; partial sequence.,0,65,2,133,36.00,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUCCUCACUGAGGAUCUACGAUAUUAAACUGAUUUUUGGAACUGGGGGAAGAUGCAGGAGCUUGCUCCGACUUCCCCACGGGUUGGCC,AF185203.1/2-133,2-133,0,131,AF185203.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23651,AF185204.1,1,sp|AF185204.1|AF185204 Cirratulus sp. AMW24391 U2 small nuclear RNA; partial sequence.,0,66,2,133,41.65,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCAUUGGGGGACAACGAUAUUAAACUGAUUUUUGGAACUGGGGGAAGAUGCAGGAGCUUGCUCCGACUUCCCCACGGGUUGGCC,AF185204.1/2-133,2-133,0,131,AF185204.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23652,AF185205.1,1,sp|AF185205.1|AF185205 Pectinaria sp. AMW24389 U2 small nuclear RNA; partial sequence.,0,67,2,124,38.58,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCACUGGGUCACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACACAGGGGCUUGCUCCGGCUCUUCCAC,AF185207.1/2-124 AF185205.1/2-124,2-124,0,122,AF185205.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23653,AF185206.1,1,sp|AF185206.1|AF185206 Amphitritinae sp. AMW24400 U2 small nuclear RNA; partial sequence.,0,68,2,124,34.31,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCACCCCACGUGGGUGCUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACACAGGGGCUUGCUCCGGCUCCUCCGC,AF185206.1/2-124,2-124,0,122,AF185206.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23654,AF185207.1,1,sp|AF185207.1|AF185207 Amphitritides harpa U2 small nuclear RNA; partial sequence.,0,69,2,124,38.58,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCACUGGGUCACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACACAGGGGCUUGCUCCGGCUCUUCCAC,AF185207.1/2-124 AF185205.1/2-124,2-124,0,122,AF185207.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23655,AF185208.1,1,sp|AF185208.1|AF185208 Pista australis U2 small nuclear RNA; partial sequence.,0,70,2,133,38.42,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGUACUUCGAUAUUAAACUGAUUUUUGGACAUGGGAGUUGACUCAGGAGCUUGCUCCGGCUUCUCCACGGGUUGGCC,AF185208.1/2-133,2-133,0,131,AF185208.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23656,AF185209.1,1,sp|AF185209.1|AF185209 Fauveliopsis banyuls U2 small nuclear RNA; partial sequence.,0,71,2,124,39.62,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCAUUGGGUCACUUCGAUAUUAAACUGAUUUUUGGAAGGGGGAGAAGAUGCAGGAGCUUGCUCCGACUUCUCCAC,AF185209.1/2-124,2-124,0,122,AF185209.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23657,AF185210.1,1,sp|AF185210.1|AF185210 Sternaspis sp. U2 small nuclear RNA; partial sequence.,0,72,2,133,35.16,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUUUCCCCCAUUGGGGGAUUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGAAGAUGCUGGGGCUUGCUCCGACUUCUCCACGGGUUGGCC,AF185210.1/2-133,2-133,0,131,AF185210.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23658,AF185211.1,1,sp|AF185211.1|AF185211 Malacoceros sp. AMW8671 U2 small nuclear RNA; partial sequence.,0,73,2,124,34.51,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUGCUCAUCGAGUCUCUACGAUAUUAAACUGAUUUUUGGACUGAGGAGGGGUUUCUGGAGCUUGCUCCGAACCCUCCAC,AF185211.1/2-124,2-124,0,122,AF185211.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23659,AF185212.1,1,sp|AF185212.1|AF185212 Mesochaetopterus sp. AMW22402 U2 small nuclear RNA; partial sequence.,0,74,2,133,39.55,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUCUCCAUAGGAGAACUACGAUAUUAAACUGAUUUUUGGACAUGGNCAGAGCGCUAGGGGCUUGCUCCGCCUCCGUCACGGGUCUGCC,AF185212.1/2-133,2-133,0,131,AF185212.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23660,AF185213.1,1,sp|AF185213.1|AF185213 Paralepidonotus ampulliferus U2 small nuclear RNA; partial sequence.,0,75,2,123,33.57,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCGGUGCAUGCACCGCUACGAUAUUAAACUGAUUUUUGGAACUAGGCGGUGGCUCUGGGNUUUACCUACCCACCGCCAC,AF185213.1/2-123,2-123,0,121,AF185213.1/2-123
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23661,AF185214.1,1,sp|AF185214.1|AF185214 Sigalion bandaensis U2 small nuclear RNA; partial sequence.,0,76,2,122,42.06,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUGGUGCAUGCACCACUUCGAUAUUAAACUGAUUUUUGGAACCAGGUGGUAGCUAAGGGGUUUACUCCUCUACCACCA,AF342705.1/2-122 AF185214.1/2-122,2-122,0,120,AF185214.1/2-122
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23662,AF185215.1,1,sp|AF185215.1|AF185215 Glycera tridactyla U2 small nuclear RNA; partial sequence.,0,77,2,133,36.60,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGUACAUCGAUAUUAAACUGAUUUUUGGACUUCGGCGAAGUGUCAGGAGCUUGCUCCGCCUUUGCCACGGGUUGGCC,AF185215.1/2-133,2-133,0,131,AF185215.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23663,AF185216.1,1,sp|AF185216.1|AF185216 Nephtys australiensis U2 small nuclear RNA; partial sequence.,0,78,2,133,34.25,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCUCCAUUGGGGGACUUCGAUAUUAAACUGAUUUUUGGAACUAGGCGAAGUGUCAGGAGCUUGCUCCGCCUUUGCCACGGGUUGGCC,AF185216.1/2-133,2-133,0,131,AF185216.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23664,AF185217.1,1,sp|AF185217.1|AF185217 Ceratonereis longiceratophora U2 small nuclear RNA; partial sequence.,0,79,2,135,25.23,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCANACUGCNNCACUAUGAUAUUAAACUGAUUUUUGGACAUAGGCGUUGUGUUCGGAGGCUUGCUCCAACCUUUGCCACGGGUUGGCC,AF185217.1/2-135,2-135,0,133,AF185217.1/2-135
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23665,AF185218.1,1,sp|AF185218.1|AF185218 Eurythoe sp. AMW4444 U2 small nuclear RNA; partial sequence.,0,80,2,124,34.39,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGCCCCAUCGGGGUACUUCGAUAUUAAACUGAUUUUUGGAACUGGGCGAAGAGUCAGGAGCUUGCUCCGCCUUUGCCAC,AF185218.1/2-124,2-124,0,122,AF185218.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23666,AF185219.1,1,sp|AF185219.1|AF185219 Lumbrineris latreilli U2 small nuclear RNA; partial sequence.,0,81,2,133,43.60,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCACUGGGGGACAUCGAUAUUAAACUGAUUUUUGGACUUGGGAGAAGAUCCUGGGGCUUGCUCCGACUUCUCCACGGGUUGGCC,AF185219.1/2-133,2-133,0,131,AF185219.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23667,AF185220.1,1,sp|AF185220.1|AF185220 Marphysa macintoshi U2 small nuclear RNA; partial sequence.,0,82,2,124,37.36,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCAUUGGGGGACAUCGAUAUUAAACUGAUUUUUGUGCCUGGGAGAAGAUGCUGGGGCUUGCUCCGACUUCUCCAC,AF185220.1/2-124,2-124,0,122,AF185220.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23668,AF185221.1,1,sp|AF185221.1|AF185221 Eunice australis U2 small nuclear RNA; partial sequence.,0,83,2,133,28.68,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAGCUCCCCCAUUGGGGGACCUCGAUAUUAAACUGAUUUUUGAACCUGGGAGAAGAUGCUGGGGCUUGCUCCGACUUCUCCACGGGUUGGCC,AF185221.1/2-133,2-133,0,131,AF185221.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23669,AF185222.1,1,sp|AF185222.1|AF185222 Euclymene trinalis U2 small nuclear RNA; partial sequence.,0,84,2,128,37.33,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCACUGGGUCACUUCGAUAUUAAACUGAUUUUUGGACAUGGGCGAGGUGUCAGGAGCUUGCUCCGCCCUUGCCACGGGU,AF185222.1/2-128,2-128,0,126,AF185222.1/2-128
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23670,AF185223.1,1,sp|AF185223.1|AF185223 Mediomastus australiensis U2 small nuclear RNA; partial sequence.,0,85,2,124,41.43,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGACCCCCAUCGGGGGUCUUUGAUAUUAAACUGAUUUUUGNACUUGGGGGAAGAUACAGGGGCUUGCUCCGACUUCCCCAC,AF185223.1/2-124,2-124,0,122,AF185223.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23671,AF185224.1,1,sp|AF185224.1|AF185224 Notomastus torquatus U2 small nuclear RNA; partial sequence.,0,86,2,124,42.16,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGACCCCCAUUGGGGGUCUAUGAUAUUAAACUGAUUUUUGAACCUGGGGGAAGAUACAGGGGCUUGCUCCGACUUCCCCAC,AF185224.1/2-124,2-124,0,122,AF185224.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23672,AF185225.1,1,sp|AF185225.1|AF185225 Polyophthalmus pictus U2 small nuclear RNA; partial sequence.,0,87,2,124,37.73,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUGUACAUUGUACAACUAUGAUAUUAAACUGAUUUUUGGAACUGGGAGAAGAUUCAGGGGCUUGCUCCGACUUCUCCAC,AF185225.1/2-124,2-124,0,122,AF185225.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23673,AF185226.1,1,sp|AF185226.1|AF185226 Phylo felix U2 small nuclear RNA; partial sequence.,0,88,2,133,37.75,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUGGCCCAUUGGGUCACUUCGAUAUUAAACUGAUUUUUGGACAUGGGCGAAGUGUUUGGAGCUUGCUCCGCCUUUGCCACGGGUUGGCC,AF185226.1/2-133,2-133,0,131,AF185226.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23674,AF185227.1,1,sp|AF185227.1|AF185227 Scoloplos simplex U2 small nuclear RNA; partial sequence.,0,89,2,133,35.79,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUGACCCAUAGGGUCACUUCGAUAUUAAACUGAUUUUUGGACAUGGACGAAGUGUUUGGAGCUUGCUCCGCCUUUGUCACGGGUUGGCC,AF185227.1/2-133,2-133,0,131,AF185227.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23675,AF185228.1,1,sp|AF185228.1|AF185228 Lumbricus terrestris U2 small nuclear RNA; partial sequence.,0,90,2,124,40.74,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCUAUCCGGGGACAUCGAUAUUAAACUGAUUUUUGGACUUAGGAGAAGAUGCAGGGGCUUGCUCCGGCUUCUCCAC,AF185228.1/2-124,2-124,0,122,AF185228.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23676,AF185229.1,1,sp|AF185229.1|AF185229 Bonellia sp. U2 small nuclear RNA; partial sequence.,0,91,2,133,36.07,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGGCCUCCAUUGGAGGCUUACGAUAUUAAACUGAUUUUUGUGAACGGGGGAAGACGCGGGAGCUUGCUCCGACUUCCCCGCGGGUUGGCC,AF185229.1/2-133,2-133,0,131,AF185229.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,23677,AF185230.1,1,sp|AF185230.1|AF185230 Sipuncula sp. 105045 U2 small nuclear RNA; partial sequence.,0,92,2,133,46.18,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCUCAUUGAGUCACUACGAUAUUAAACUGAUUUUUGAAUUCGGACUAUGUGAACGGGGUUUACUCCGCCAUAGUCACGGGUUGGCC,AF185230.1/2-133,2-133,0,131,AF185230.1/2-133
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,37173,AF325695.1,1,sp|AF325695.1|AF325695 Schistosoma mansoni microsatellite SMDA28 sequence.,1,93,199,10,135.34,AUCGCUUCUCGGCUCUCUGAGCUAAGAUCAUGUGUAGUAUCUGUUCUUUGCAGUGUAAUUUCUGCAACGGUCUCUAAACUGAGACCAAUGAAAUUACCUGUAUUUUUCACCUCCGGACGGGUGCUGUGAGCUUGCUCAACCCCGUCCACGGGUCGGCCUCGUAUUGCAUUGCCUCGAGGAUUGGAAGCUU,AF325695.1/199-10,199-10,0,189,AF325695.1/199-10
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,37193,AF326335.1,1,sp|AF326335.1|AF326335 Crithidia fasciculata U2 snRNA; complete sequence.,0,94,1,142,104.47,AUAUCUUCUCGGCUUUUUAGCUAAGAUCAUGUUUAUAAACUGUUCUUAUCAGAGUAACUCCUGAUAUUGCCUUCGGGCAAAGGAAUACAAAUGAUCGCACUAGGUUGUUUCCCUGGAGUUCCACCUUUCCAGGGGAGCAACU,AF326335.1/1-142,1-142,0,141,AF326335.1/1-142
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38384,AF342704.1,1,sp|AF342704.1|AF342704 Trichobranchus sp. W24401 small nuclear RNA U2; partial sequence.,0,95,2,125,41.13,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACCGGGGUACAUCGAUAUUAAACUGAUUUUUGGAACUGGGAGAGGACACAGGAGCUUGCUCCGGCCCCUCCACG,AF342704.1/2-125,2-125,0,123,AF342704.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38385,AF342705.1,1,sp|AF342705.1|AF342705 Isolda sp. Col2001 small nuclear RNA U2; partial sequence.,0,96,2,122,42.06,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUGGUGCAUGCACCACUUCGAUAUUAAACUGAUUUUUGGAACCAGGUGGUAGCUAAGGGGUUUACUCCUCUACCACCA,AF342705.1/2-122 AF185214.1/2-122,2-122,0,120,AF342705.1/2-122
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38386,AF342706.1,1,sp|AF342706.1|AF342706 Amphicteis dalmatica small nuclear RNA U2; partial sequence.,0,97,2,125,35.92,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCUACCAGGGUACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGAGCCAGGAGCUUGCUCCGACUCCUCCACG,AF342706.1/2-125,2-125,0,123,AF342706.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38387,AF342707.1,1,sp|AF342707.1|AF342707 Rhinothelepus lobatus small nuclear RNA U2; partial sequence.,0,98,2,125,41.80,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGUACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACRCAGGGGCUUGCUCCGGCUCCUCCACG,AF342707.1/2-125,2-125,0,123,AF342707.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38388,AF342708.1,1,sp|AF342708.1|AF342708 Amaeana trilobata small nuclear RNA U2; partial sequence.,0,99,2,125,38.20,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUACCCCACGUGGGUACUUCGAUAUUAAACUGAUUUUUGGACUUGGAAGGAGACACAGGGGCUUGCUCCGGCUCCUUCACG,AF342709.1/2-125 AF342708.1/2-125,2-125,0,123,AF342708.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38389,AF342709.1,1,sp|AF342709.1|AF342709 Lysilla pacifica small nuclear RNA U2; partial sequence.,0,100,2,125,38.20,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUACCCCACGUGGGUACUUCGAUAUUAAACUGAUUUUUGGACUUGGAAGGAGACACAGGGGCUUGCUCCGGCUCCUUCACG,AF342709.1/2-125 AF342708.1/2-125,2-125,0,123,AF342709.1/2-125
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,38390,AF342710.1,1,sp|AF342710.1|AF342710 Loimia ingens small nuclear RNA U2; partial sequence.,0,101,2,124,40.76,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACCGGGGUACUUCGAUAUUAAACUGAUUUUUGGACCUAGGAGAAGRCACAGGGGCUUGCUCCGGCUUCUCCAC,AF342710.1/2-124,2-124,0,122,AF342710.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41082,AF368447.1,1,sp|AF368447.1|AF368447 Bombyx mori clone U2A small nuclear RNA; complete sequence.,0,102,1,152,33.10,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGAGAUGUUAGGGGCUCGCUCCACUCUCGUCACGGGUCGGCCCGGCAUUGCAGUGCC,AF368447.1/1-152,1-152,0,151,AF368447.1/1-152
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41083,AF368448.1,1,sp|AF368448.1|AF368448 Bombyx mori clone U2B small nuclear RNA; complete sequence.,0,103,1,137,36.98,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAACGAUGGGAUGUUCGGGGCUCGCUCCACUCCCGUCACGGGUCGGCC,AF368448.1/1-137,1-137,0,136,AF368448.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41084,AF368449.1,1,sp|AF368449.1|AF368449 Bombyx mori clone U2C small nuclear RNA; complete sequence.,0,104,1,137,39.40,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAACGACGGGAUGUUCGGGGCUCGCUCCACUCCCGUCACGGGUCGGCC,AF368449.1/1-137,1-137,0,136,AF368449.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41085,AF368450.1,1,sp|AF368450.1|AF368450 Bombyx mori clone U2D small nuclear RNA; complete sequence.,0,105,1,137,32.50,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUUCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAACGACGAGAUGUUCGGGGCUCGCUCCACUCUCGUCACGGGUCGGCC,AF368450.1/1-137,1-137,0,136,AF368450.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41086,AF368451.1,1,sp|AF368451.1|AF368451 Bombyx mori clone U2E small nuclear RNA; complete sequence.,0,106,1,152,29.26,CUAAGAUCAAAGUGUAGUAUCUGUUCUUCUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGAGAUGUUAGGGGCUCGCUCCACUCUCGUCACGGGUCGGCCCGGCAUUGCAGUGCC,AF368451.1/1-152,1-152,0,151,AF368451.1/1-152
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41087,AF368452.1,1,sp|AF368452.1|AF368452 Bombyx mori clone U2F small nuclear RNA; complete sequence.,0,107,1,137,32.21,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCUCAUUGAGGGACCAGUAUAUUAAGCUGAUUUUUGUAAAACGAUGGGAUGUUCGGGGCUCGCUCCACUCCCGUCACGGGUCGGCC,AF368452.1/1-137,1-137,0,136,AF368452.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41088,AF368453.1,1,sp|AF368453.1|AF368453 Bombyx mori clone U2G small nuclear RNA; complete sequence.,0,108,1,152,37.29,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGAGAUGUUAGGGGCUCGCUCCACUCUCGUCACGGGUCGGCCCGGCAUUGCAGUGCC,AF368453.1/1-152,1-152,0,151,AF368453.1/1-152
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41089,AF368454.1,1,sp|AF368454.1|AF368454 Bombyx mori clone U2H small nuclear RNA; complete sequence.,0,109,1,152,27.80,CUAAGAUCAAAGUGUGGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGAGAUGUUAGGGGCUCGCUCCACUCUCGUCACGGGUCGGCCCGGCAUUGCAGUGCC,AF368454.1/1-152,1-152,0,151,AF368454.1/1-152
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41090,AF368455.1,1,sp|AF368455.1|AF368455 Bombyx mori clone U2HH small nuclear RNA; complete sequence.,0,110,1,137,33.38,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGAGAUGUUAGGGGCUCGCUCCACUCCCGUCACGGGUCGGCC,AF368455.1/1-137,1-137,0,136,AF368455.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41091,AF368456.1,1,sp|AF368456.1|AF368456 Bombyx mori clone U2I small nuclear RNA; complete sequence.,0,111,1,137,39.20,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAUCGACGAGAUGUUCGGGGCUCGCUCCACUCUCGUCACGGGUCGGCC,AF368456.1/1-137,1-137,0,136,AF368456.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41092,AF368457.1,1,sp|AF368457.1|AF368457 Bombyx mori clone U2J small nuclear RNA; complete sequence.,0,112,1,141,29.53,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGGGAAGUUCGGGGCUCGCUCCACUCCUUUCACGGGUCGGCCCGGC,AF368457.1/1-141,1-141,0,140,AF368457.1/1-141
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41093,AF368458.1,1,sp|AF368458.1|AF368458 Bombyx mori clone U2KK small nuclear RNA; complete sequence.,0,113,1,141,31.74,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGGGAAGUUCGGGGCUCGCUCCACUUCUGUCACGGGUCGGCCCGGC,AF368458.1/1-141,1-141,0,140,AF368458.1/1-141
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41094,AF368459.1,1,sp|AF368459.1|AF368459 Bombyx mori clone U2N small nuclear RNA; complete sequence.,0,114,1,137,36.22,CUAAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAACGACGAGAUGUUCGGGGCUCGCUCCACUCUCGUCACGGGUCGGCC,AF368459.1/1-137,1-137,0,136,AF368459.1/1-137
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41095,AF368460.1,1,sp|AF368460.1|AF368460 Bombyx mori clone U2O small nuclear RNA; complete sequence.,0,115,1,136,33.69,CUUAAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUUCCUCAUUGAGGGACCAGUAUAUUAAACUGAUUUUUGUAAAACGACGAGAUGUUCGGGGCUCGCUCCACUCUCGUCACGGGUCGGCC,AF368460.1/1-136,1-136,0,135,AF368460.1/1-136
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41096,AF368461.1,1,sp|AF368461.1|AF368461 Bombyx mori clone U2R small nuclear RNA; complete sequence.,0,116,1,152,34.29,CUUAGAUCAAAGUGUAGUAUCUGUUCUUUUCAGCUUAAUAUCUGAAAGUUCCCGCAUUGCGGGACCAGUAUAUUAAACUGAUUUUUGUAAAAUGACGAGAUGUUAGGGGCUCGCUCCACUCUCGUCACGGGUCGGCCCGGCAUUGCAGUGCC,AF368461.1/1-152,1-152,0,151,AF368461.1/1-152
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41301,AF370820.1,1,sp|AF370820.1|AF370820 Carcinoscorpius rotundicauda U2 small nuclear RNA; complete sequence.,0,117,2,124,41.35,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUUCCCAUUGGGGACCAUGAUAUUAAACUUAUUUUUGUAAGGCGGCGGGGUGCUUGGAGCUUGCUCCACUCCUGCCACG,AF370820.1/2-124,2-124,0,122,AF370820.1/2-124
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41302,AF370821.1,1,sp|AF370821.1|AF370821 Callibaetis ferrugineus U2 small nuclear RNA; complete sequence.,0,118,2,132,26.60,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGACCUGCAUUGCAGGUCCAGAAUAUUAAACUGAUUUUUGGAAUUUGUCGGGAUGUUAGGAGCUUGCUCCACUCCUGACACGGGUUGGC,AF370821.1/2-132,2-132,0,130,AF370821.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41303,AF370822.1,1,sp|AF370822.1|AF370822 Periplaneta americana U2 small nuclear RNA; complete sequence.,0,119,2,132,29.22,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCUGCAUUGCAGGACCAGAAUAUUAAACUGAUUUUUGGAAAAUGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCACGGGUUGGC,AF370822.1/2-132,2-132,0,130,AF370822.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41304,AF370823.1,1,sp|AF370823.1|AF370823 Locusta migratoria U2 small nuclear RNA; complete sequence.,0,120,2,132,37.37,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCUGCAUCGCAGGACCAGAAUAUUAAACUCAUUUUUGGAUCAUGACGGAGUGCUAAGUGCUUGCACUACCUCUGUCACGGGUUGGC,AF370823.1/2-132,2-132,0,130,AF370823.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz,41307,AF370826.1,1,sp|AF370826.1|AF370826 Homarus americanus U2 small nuclear RNA; complete sequence.,0,121,2,132,27.49,AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAGUAUCUGAUACGAUCCCCAUGUGGGAUCUUCGAUAUUAAACUGAUUUUUGGAUCAUGGCGAAGUGCUAGGGGCUUGCUCCACCUUUGCCGCNGAUAGGC,AF370826.1/2-132,2-132,0,130,AF370826.1/2-132
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13572,L22247.1,1,sp|L22247.1|ALSNUB Ascaris lumbricoides small nuclear RNA (snRNA) U2-1 gene; and U2-2 pseudogene.,0,122,1054,1248,52.50,CUGGCUGGGCUCCGCUUCUUGGCUGAGACCAAGCUGUAGUGUCUGUUCUUAUGAUUUUGAUUUCUGAUAUGUGAUCCAUCGACCACUUCAAGGUUAAUCCACUUUUGAAAUACAGGGAGAUUCGUCGAAGCUUGCUCCUCGCCUUUCGCUGGUCGACCUGGCGUUGCGUUUGCAUCCGGGAACGGCUCGUUCCCG,L22247.1/1054-1248 L22247.1/5753-5559,6321-6513 486-294 1054-1248 5753-5559,0,194,L22247.1/1054-1248
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13572,L22247.1,1,sp|L22247.1|ALSNUB Ascaris lumbricoides small nuclear RNA (snRNA) U2-1 gene; and U2-2 pseudogene.,0,123,6321,6513,172.89,AUCGCUUCUCGGCCUAUUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUCUCUGAUAUGUGAUCAACCGAUCACUUCGAGAUUAAUCUAUUUUUGCAACCUUGGAAGGUUCGUAGGGGCUUGCUCCUCGCCUUCCGCGGGUCGACCCGGUAUUGCACCUACCUCCGGGAACGCCCACGCCCCC,L22247.1/6321-6513 L22247.1/486-294,6321-6513 486-294 1054-1248 5753-5559,0,192,L22247.1/6321-6513
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13572,L22247.1,1,sp|L22247.1|ALSNUB Ascaris lumbricoides small nuclear RNA (snRNA) U2-1 gene; and U2-2 pseudogene.,1,124,5753,5559,52.50,CUGGCUGGGCUCCGCUUCUUGGCUGAGACCAAGCUGUAGUGUCUGUUCUUAUGAUUUUGAUUUCUGAUAUGUGAUCCAUCGACCACUUCAAGGUUAAUCCACUUUUGAAAUACAGGGAGAUUCGUCGAAGCUUGCUCCUCGCCUUUCGCUGGUCGACCUGGCGUUGCGUUUGCAUCCGGGAACGGCUCGUUCCCG,L22247.1/1054-1248 L22247.1/5753-5559,6321-6513 486-294 1054-1248 5753-5559,0,194,L22247.1/5753-5559
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,13572,L22247.1,1,sp|L22247.1|ALSNUB Ascaris lumbricoides small nuclear RNA (snRNA) U2-1 gene; and U2-2 pseudogene.,1,125,486,294,172.89,AUCGCUUCUCGGCCUAUUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUCUCUGAUAUGUGAUCAACCGAUCACUUCGAGAUUAAUCUAUUUUUGCAACCUUGGAAGGUUCGUAGGGGCUUGCUCCUCGCCUUCCGCGGGUCGACCCGGUAUUGCACCUACCUCCGGGAACGCCCACGCCCCC,L22247.1/6321-6513 L22247.1/486-294,6321-6513 486-294 1054-1248 5753-5559,0,192,L22247.1/486-294
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,15522,AY007785.1,1,sp|AY007785.1|AY007785 Diplonema papillatum spliced leader RNA and 5S ribosomal RNA genes; complete sequence.,0,126,849,1041,157.54,AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGNGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACAGCACACUUGUGUGUCGAUGAGUUGAUGUGAAUUUUUCACGGGGGUGGCGGGUAGCUCUGAGGCAAACUCAGAGUCCGCCACACGUGUUGCCCUGGAGCUGCACUACAUCAGGAGUUGGCACACCC,AY007785.1/849-1041,849-1041,0,192,AY007785.1/849-1041
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,15525,AY007788.1,1,sp|AY007788.1|AY007788 Leishmania tarentolae tRNA-Ala; snoRNA; and U2 snRNA genes; complete sequence.,0,127,537,682,108.91,AUAUCUUCUCGGCUAUUUAGCUAAGAUCAUGUUUAUAAACUGUUCUUAUCAGAGUAACUCCUGAUACUGCCUUCGGGCAAAGGAAUAGAAAUUAUAACUCAAGGUUGUUUCCCUGGAGUUCCACGUUUCCAGGGGAGCAACUCUUU,AY007788.1/537-682,537-682,0,145,AY007788.1/537-682
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,34847,AY205287.1,1,sp|AY205287.1|AY205287 Trypanosoma cruzi U2 small nuclear RNA; partial sequence.,1,128,148,4,94.94,AUAUCUUCUGGGCUAUUUAGCUAAGAUCAAGUUUUUAAACUGUUCUUAUCAGAGUAAUUCCUGAUAUGGGNCUUUGUCCCAGGAAUAGAAACCGUUGAUCUCUCAAGCGUUCUUCCGGAGUUCCACGUGUCCGGAUGGAGCGUCA,AY205287.1/148-4,148-4,0,144,AY205287.1/148-4
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38060,AY296851.1,1,sp|AY296851.1|AY296851 Ischnochiton australis U2 snRNA gene; partial sequence.,0,129,2,121,27.93,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCUUCCAUUGGAAGACAUCGAUAUUAAACUGAUUUUUGGAACUAGGUGAGAGACUUGGGGCUUGCUCCAUCCUCGCCAC,AY296851.1/2-121,2-121,0,119,AY296851.1/2-121
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38062,AY296853.1,1,sp|AY296853.1|AY296853 Anadara trapezia U2 snRNA gene; partial sequence.,0,130,2,129,32.61,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUCCCCAUUGGGGAACUUCGAUAUUAAACUGAUUUUUGGUACUAGAUGAGAUGUCAGGGGCUUGCUCCGCUCUCGUCACGGGUUGGC,AY296853.1/2-129,2-129,0,127,AY296853.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38064,AY296855.1,1,sp|AY296855.1|AY296855 Cellana tramoserica U2 snRNA gene; partial sequence.,0,131,2,121,27.45,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGCCUCAAUGAGGCACUUCGAUAUUAAACUGAUUUUUGGACUUAGAUGAGGUGUCCGAGGCUUGCUUCGCCCUCAUCAC,AY296855.1/2-121,2-121,0,119,AY296855.1/2-121
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38065,AY296856.1,1,sp|AY296856.1|AY296856 Notoacmea petterdi U2 snRNA gene; partial sequence.,0,132,2,129,31.29,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCAUCGGGGUACUUCGAUAUUAAACUGAUUUUUGGACACAGAUGAGGUGCCCGGAGCUUGCUCCGCCCUCAUCACGGGUUGCC,AY296856.1/2-129,2-129,0,127,AY296856.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38067,AY296858.1,1,sp|AY296858.1|AY296858 Perotrochus midas U2 snRNA gene; partial sequence.,0,133,2,121,21.47,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCUCCCAAUGGAGGACAUCGAUAUUAAACUGAUUUUUGGAACGGGGUGAGGUGUCCGGGGCUUGCUUCGCCCUCACCAC,AY296858.1/2-121,2-121,0,119,AY296858.1/2-121
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38068,AY296859.1,1,sp|AY296859.1|AY296859 Austrocochlea porcata U2 snRNA gene; partial sequence.,0,134,2,123,20.34,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCUUCUAUAUGAAGACAUCGAUAUUAAACUGAUUUUUAGAACGGGAUGAGGUGCCACGGGGCUUGCUCCGCCCUCAUCACG,AY296859.1/2-123,2-123,0,121,AY296859.1/2-123
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38069,AY296860.1,1,sp|AY296860.1|AY296860 Coccopigya hispida U2 snRNA gene; partial sequence.,0,135,2,121,26.17,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCUCCAUCGGAGGACUUCGAUAUUAAACUGAUUUUUGGAACACGGCGAAGUGUCAGGGGCUUGCUCCGUCUUUGCCAC,AY296860.1/2-121,2-121,0,119,AY296860.1/2-121
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38070,AY296861.1,1,sp|AY296861.1|AY296861 Depressigyra globulus U2 snRNA gene; partial sequence.,0,136,2,121,33.04,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCUCCAUUGGGGGACAUCGAUAUUAAACUGAUUUUUGAAAGGGGGUGAGGUGCCCGGGGCUUGCUCCGCCCUCACCAC,AY296861.1/2-121,2-121,0,119,AY296861.1/2-121
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38071,AY296862.1,1,sp|AY296862.1|AY296862 Leptopoma perlucida U2 snRNA gene; partial sequence.,0,137,2,121,25.03,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGNUCUCCANUGGAGAACUUCGAUAUUAAACUGAUUUUUGACACGAGGCGAAGUGUCAGGGGCUUGCUCCACCUUCGCCAC,AY296862.1/2-121,2-121,0,119,AY296862.1/2-121
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38072,AY296863.1,1,sp|AY296863.1|AY296863 Campanile symbolicum U2 snRNA gene; partial sequence.,0,138,2,129,30.54,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCUCCCCAAUGGGGAGCUUCGAUAUUAAACUGAUUUUUGACACUUGACGGAGUGUUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGC,AY296863.1/2-129,2-129,0,127,AY296863.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38075,AY296866.1,1,sp|AY296866.1|AY296866 Conus miles U2 snRNA gene; partial sequence.,0,139,2,129,22.82,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCCCCCUAUCCGGGGGCUUCGAUAUUAAACUGAUUUUUGACUCUCGGUGAAGUGUCAGGGGCUUGCUCCGCCUUCGCCACGGGUCGGC,AY296866.1/2-129,2-129,0,127,AY296866.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38076,AY296867.1,1,sp|AY296867.1|AY296867 Cornirostra pellucida U2 snRNA gene; partial sequence.,0,140,2,129,30.05,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCUAUGUGGUCACUACGAUAUUAAACUGAUUUUUGGACACUGGUGAGAUGUCCGGGGCUUGCUCCGCUCUCGCCGCGGGUCGGC,AY296867.1/2-129,2-129,0,127,AY296867.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38078,AY296869.1,1,sp|AY296869.1|AY296869 Onchidium sp. C203228 U2 snRNA gene; partial sequence.,0,141,2,126,24.95,AAAGUGUAGUAUCUGUCUUAUCAGCUUAAUAUCUGAUACGUGGCUCAUUGAGUCACUACGAUAUUAAACUGAUUUUUGGACAUAGGCGAGAUGCCCGGGGNUUGCUCCGCUCUCGNCACGGUNCG,AY296869.1/2-126,2-126,0,124,AY296869.1/2-126
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38079,AY296870.1,1,sp|AY296870.1|AY296870 Aplysia cf. juliana U2 snRNA gene; partial sequence.,0,142,2,129,29.90,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCUUCCUNAGCCACUACGAUAUUAAACUGAUUUUUGGACACAGGCGAGAUGCCCGGGGCUUGCUCCGCUCUCGCCACGGGUCGGC,AY296870.1/2-129,2-129,0,127,AY296870.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,38081,AY296872.1,1,sp|AY296872.1|AY296872 Siphonaria zelandica U2 snRNA gene; partial sequence.,0,143,2,129,38.47,AAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCUCAUUGAGUCACUACGAUAUUAAACUGAUUUUUGGACUUAGGCGAGAUGCCCGGGGCUUGCUCCGCUCUCGCCACGGGUCGGC,AY296872.1/2-129,2-129,0,127,AY296872.1/2-129
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43487,AL009246.1,1,sp|AL009246.1|CEC47F8 Caenorhabditis elegans cosmid C47F8,1,144,8935,8745,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,8935-8745,0,190,AL009246.1/8935-8745
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43756,Z81495.1,1,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2,0,145,26606,26796,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,3313-3123 9940-9750 26606-26796,0,190,Z81495.1/26606-26796
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43756,Z81495.1,1,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2,1,146,9940,9750,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,3313-3123 9940-9750 26606-26796,0,190,Z81495.1/9940-9750
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43756,Z81495.1,1,sp|Z81495.1|CEF08G2 Caenorhabditis elegans cosmid F08G2,1,147,3313,3123,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,3313-3123 9940-9750 26606-26796,0,190,Z81495.1/3313-3123
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43790,Z92830.1,1,sp|Z92830.1|CEF11A5 Caenorhabditis elegans cosmid F11A5,1,148,35793,35603,159.13,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAUCCUAGGAAAGACUCGGGGCUUGCUCCGACUUUCCGCGGGUCGUACUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,X51379.1/254-444 Z92830.1/35793-35603,35793-35603,0,190,Z92830.1/35793-35603
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43840,Z81504.2,1,sp|Z81504.2|CEF15H9 Caenorhabditis elegans cosmid F15H9,0,149,2509,2699,155.92,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAAGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,Z81504.2/2509-2699 Z81504.2/7291-7101,2509-2699 7291-7101,0,190,Z81504.2/2509-2699
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,43840,Z81504.2,1,sp|Z81504.2|CEF15H9 Caenorhabditis elegans cosmid F15H9,1,150,7291,7101,155.92,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAAGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,Z81504.2/2509-2699 Z81504.2/7291-7101,2509-2699 7291-7101,0,190,Z81504.2/7291-7101
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44240,Z81553.1,1,sp|Z81553.1|CEF56H6 Caenorhabditis elegans cosmid F56H6,0,151,6257,6447,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,8918-8728 7099-7289 6257-6447,0,190,Z81553.1/6257-6447
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44240,Z81553.1,1,sp|Z81553.1|CEF56H6 Caenorhabditis elegans cosmid F56H6,0,152,7099,7289,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,8918-8728 7099-7289 6257-6447,0,190,Z81553.1/7099-7289
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44240,Z81553.1,1,sp|Z81553.1|CEF56H6 Caenorhabditis elegans cosmid F56H6,1,153,8918,8728,153.48,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGUCGGGCUCGGCCCAGUCCCC,Z81553.1/8918-8728,8918-8728 7099-7289 6257-6447,0,190,Z81553.1/8918-8728
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,44882,Z81105.2,1,sp|Z81105.2|CER05D7 Caenorhabditis elegans cosmid R05D7,1,154,12802,12612,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,12802-12612,0,190,Z81105.2/12802-12612
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;60;78;26;130;152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left;59;60;77;78;25;26;129;130;151;152 ,Rfam/cm/RF00004.cm (global),/projects/bio/zasha/seqs/embl/inv02.dat.fasta.gz,45019,X51372.1,1,sp|X51372.1|CESNU21A Caenorhabditis elegans DNA encoding U2-1a snRNA,0,155,210,400,157.59,AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGGAAGACUCGGGGCUUGCUCCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCC,AL009246.1/8935-8745 Z81495.1/3313-3123 Z81553.1/7099-7289 Z81553.1/6257-6447 Z82076.1/16099-15909 X51373.1/210-400 Z81495.1/9940-9750 Z82076.1/18363-18553 Z81105.2/12802-12612 X51372.1/210-400 Z81495.1/26606-26796 X51377.1/285-475,210-400,0,190,X51372.1/210-400
./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllC