Params: ./cmzasha --no-stderr --filter 220 20 Rfam/cm/RF00004.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left,60,78,26,130,152 2struct-str data/TryAllCm_5.0/RF00004_forwardinf_hmmtype1_Saureus_0MM.bin 1/remember-left,59,60,77,78,25,26,129,130,151,152 Build: release Host: bastida.cs.washington.edu pid: 23682 ----hmm-from-cmFileName: Rfam/cm/RF00004.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00004.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00004.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----hmm-from-cmFileName: Rfam/cm/RF00004.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00004.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00004.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-left,60/remember-left,78/remember-left,26/remember-left,130/remember-left,152 ----hmm-from-cmFileName: Rfam/cm/RF00004.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00004.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Saureus_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00004.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-left,59/remember-left,60/remember-left,77/remember-left,78/remember-left,25/remember-left,26/remember-left,129/remember-left,130/remember-left,151/remember-left,152 ----cmFile: Rfam/cm/RF00004.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #9202,sp|AF053589.1|AF053589 Nosema locustae U2 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: CCACCUCUCAAAGCUCAUAGCUUUGAUCAAGUGUAGUAUCUGUUCUUGUCAGUGUGACAGCUGACAAACUAGCUCCUUGGAGCUAGAAUAUGCUGGUGUGUGUGUGGAUGCUUUGACAGGCUUGCUUGUAGGGGCCAUGCACACACCAGGCAGACUCCCGGAAGUUGUUCCGUCCGGAGCUGCACUUUUU hit 0 : 90 279 (fwd) 90.09 bits ::::::.<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCU.UCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 ACCU UC :GC: U :GC: GAUCAAGUGUAGUAUCUGUUCUU:UCAGU+U A+A 90 CCACCUcUCAAAGCUCAU-AGCUUUGAUCAAGUGUAGUAUCUGUUCUUGUCAGUGUGACA 148 _>>>>>>..,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUA..UgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 CUGA:A +::GC:CC U GG:GC:: GA+ U U U UG +G+G+G:G+:: 149 GCUGACAaaCUAGCUCCUU-GGAGCUA--GAA------UAUGCUGGUG-UGUGUGUGGAU 198 <<----.<<<<<__>>>>>-....>>.>>>>>>,,.....<<<<<<-.<<<<<<______ 118 gcAuca.guaGCUUGCuacu....gc.cccccCAC.....GggUcgc.CcuGgggUUGCA 165 GC+U+ :::GCUUGC:::U GC ::+C:CAC G:::+:+ CC:G:+GUUG 199 GCUUUGaCAGGCUUGCUUGUagggGCcAUGCACACaccagGCAGACUcCCGGAAGUUG-- 256 ____..>>>>>>--->>>>>>::::::: 166 CUAC..ucCagGGCcugGccCACCCCuc 191 U+C :C:GG : :::CAC U+ 257 -UUCcg-UCCGG--AG-CUGCACUUUUU 279 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39740,sp|AL683874.1|AFA14E5 Aspergillus fumigatus BAC AfA14E5. ----isReversed: 1 ----hitSequence: UCAGCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCUCUGAAAGUGUUCUAAGGAACACAACAUUGAUUAAUCUCAUUUUUGGAUCUCGUGGCAAGGCCUCUGUGCUUGCGCAUGCCUUGCCACACAGUGUCAUUGGGCUUACACUACCCCCAAUUGACGCGACCCUU hit 1 : 16263 16072 (rev) 134.05 bits ::::::.<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCU.UCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A+CU UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGUUUAAU 51838 UCAGCUcUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUC 51897 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,..,,,<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAg..gGgGggg 115 UCUGA:A GUG::C A G::CACAA AUUAA U AUUUUUG+A G+GG:: 51898 UCUGAAA-GUGUUCUAA-GGAACACAAcaUUGAUUAAUCUCAUUUUUGGAUcuCGUGGCA 51955 <<<<----.<<<<<__>>>>>->>>>>>>>,,...<<<<<<-<<<<<<__________>> 116 gggcAuca.guaGCUUGCuacugccccccCAC...GggUcgcCcuGgggUUGCACUACuc 171 :GGC C+ : GCUUGC : UGCC:::CCAC G:G:C: :::GG: UU CACUAC:C 51956 AGGC--CUcUGUGCUUGCGCAUGCCUUGCCACacaGUGUCA-UUGGGC-UUACACUACCC 52011 >>>>--->>>>>>::::::: 172 CagGGCcugGccCACCCCuc 191 C::: +:G:C:C CCCU+ 52012 CCAA--UUGACGCGACCCUU 52029 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58704,sp|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) ----isReversed: 0 ----hitSequence: CCACCUCUCAAGCCAAUCGGCUUUGAUCAAGUGUAGUAUCUGUUCUUGCCAGUGUAAGAACUGGCAUUAUCCGUCAGGAUAAACUCACGAAUUUUUGGGCGGCGAGAUGAGGCAGCGGAGCUUGAGCGCUUGCGUUUCGGUUGCUCUGCCAGAGGCUCGCGGGCUCCC hit 2 : 168546 168713 (fwd) 51.97 bits ::::::.<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCU.UCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 ACCU UC :GCC U GGC: GAUCAAGUGUAGUAUCUGUUCUU::CAGU+UAA A 168546 CCACCUcUCA-AGCCAAUCGGCUUUGAUCAAGUGUAGUAUCUGUUCUUGCCAGUGUAAGA 168604 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 CUG::AU:::CC U+ GG:::AA + +AUUUUUG+ GG ::G:: 168605 ACUGGCAUUAUCCG--UC-AGGAUAAAcUCA------CGAAUUUUUGGGCGG-CGAGAUG 168654 <----.<<<<<__>>>>>-.>>>>>>>>,,.<<<<<<-<<<<<<__________.>>>>> 119 cAuca.guaGCUUGCuacu.gccccccCAC.GggUcgcCcuGgggUUGCACUAC.ucCag 174 : CA : ::C:: A G::U+: : :::GUUGC CU C ::: : 168655 AGGCAg-------------cGGAGCUUGAGcGCUUGC-GUUUCGGUUGCUCUGCcAGAGG 168700 >--->>>>>>::::::: 175 GGCcugGccCACCCCuc 191 C:+G::C CCC 168701 C-UCGCGGGCUCCC--- 168713 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64831,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 ----isReversed: 1 ----hitSequence: UUAGCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCUCUGAAAGUACUCUACGGAGUACAAUCGUGAUUAUUCUAAUUUUUGUAACGCGGUCGGUUUUCCUCUAGGCUUGCCUAUGAUUACCUUCCACUGUGUCCCUGGUAUUACACUGCCUCCAGGCGACGCGAACUACU hit 3 : 95728 95534 (rev) 130.05 bits ::::::.<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCU.UCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 UA+CU UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGUUUAAU 65399 UUAGCUcUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUC 65458 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGA:A GU:C:C A G:G:ACAA G AUUA U+AUUUUUG A G GG GG 65459 UCUGAAA-GUACUCUAC-GGAGUACAAucGUGAUUAUUCUAAUUUUUGUAACGCGGUCGG 65516 <<----..<<<<<__>>>>>-.>>..>>>>>>,,<<<<<<-<<<<<<__________..> 118 gcAuca..guaGCUUGCuacu.gc..cccccCACGggUcgcCcuGgggUUGCACUAC..u 170 : +UC ::GCUUGC:: U : CC CCAC:G:::: CCUGG++UU CACU C 65517 UUUUCCucUAGGCUUGCCUAUgAUuaCCUUCCACUGUGUC-CCUGGUAUUACACUGCcu- 65574 >>>>>--->>>>>>::::::: 171 cCagGGCcugGccCACCCCuc 191 CCAGG C::::C:A C ++ 65575 CCAGG--CGACGCGAACUACU 65593 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #66985,sp|Y15811.1|PRY15811 Xanthophyllomyces dendrorhous idi gene ----isReversed: 1 ----hitSequence: AUCCUCUCUGGCCUUUUGGCUUAGAUCAUGUGUAGUAUCUGUUCUUAUAAGUUUAACCACUUAUAUGGGUCCACCGGACCCAUCUGGUUUACUUCUUUUUGCCUUGCCCGUCCGGCCAUCCUCUGCUUGCACGACGGCCGGACACGAUGACCUUGCCACUGCACUGCCGGCUUGUGUUGUCA hit 4 : 2889 2708 (rev) 107.15 bits ::::::<<<.-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCU.CGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU+C UCU GGCCUUUUGGCU AGAUCA GUGUAGUAUCUGUUCUUAU:AGUUUAA+ 351 AUCC--UCUcUGGCCUUUUGGCUUAGAUCAUGUGUAGUAUCUGUUCUUAUAAGUUUAACC 408 _>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 CU:AUA ::G::CCA +GG::C::+ + UUA U U UUU +G G:::GG:C 409 ACUUAUA-UGGGUCCACCGGACCCAUCUGGUUUACUUCUUUUUGCCUUGCCCGUCCGGCC 467 ----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>>>- 120 Auca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCagGG 176 AUC : GCUUGC : G:CC:::CACG:: :: C: G: + UGCACU C :C :G 468 AUCCuCU-GCUUGCACGAcGGCCGGACACGAUGAC-CUUGCCACUGCACUGCcGGCUUG- 524 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 +:: ::CA 525 -UGUUGUCA------ 532 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #72263,sp|M14625.1|SCUGLSR1 Yeast (S.cerevisiae) LSR1 gene encoding the yeast homolog of vertebrate U2 small nuclear RNA. ----isReversed: 0 ----hitSequence: AUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGACCUCAAUGAGGCUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGGCACCCAAAAUAAUAAAAUGGACGGGAAGAGACUUUUUAAGC hit 5 : 332 488 (fwd) 91.82 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AU+ UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGU+UAA+A 332 AUC---UCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAA 388 >>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<.<<<< 61 CUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggg.gggc 119 CUGA:AUG: CC:CA UG:GGC:CA UUA UUU+AA + G :: :::: 389 CUGAAAUGA-CCUCAAUGAGGCUCA-----------UUACCUUUUAAUUU-GUUAcAAUA 435 ----.<<<<<__>>>>>->>>>>>>>,,.<<<<<<-<<<<<<__________>>>>>>-- 120 Auca.guaGCUUGCuacugccccccCAC.GggUcgcCcuGgggUUGCACUACucCagGGC 177 CA :::::: CAC :::: ::U::: UG AC :::A:: 436 CACAu-------------UUUUUGGCACcCAAAAU-AAUAAA-AUGGACGGGAAGAGA-- 478 ->>>>>>::::::: 178 cugGccCACCCCuc 191 C :::: A C 479 CUUUUUAAGC---- 488 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #72692,sp|Z36099.1|SCYBR230C S.cerevisiae chromosome II reading frame ORF YBR230c ----isReversed: 1 ----hitSequence: AUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGACCUCAAUGAGGCUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGGCACCCAAAAUAAUAAAAUGGACGGGAAGAGACUUUUUAAGC hit 6 : 2637 2481 (rev) 91.82 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AU+ UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGU+UAA+A 324 AUC---UCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAA 380 >>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<.<<<< 61 CUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggg.gggc 119 CUGA:AUG: CC:CA UG:GGC:CA UUA UUU+AA + G :: :::: 381 CUGAAAUGA-CCUCAAUGAGGCUCA-----------UUACCUUUUAAUUU-GUUAcAAUA 427 ----.<<<<<__>>>>>->>>>>>>>,,.<<<<<<-<<<<<<__________>>>>>>-- 120 Auca.guaGCUUGCuacugccccccCAC.GggUcgcCcuGgggUUGCACUACucCagGGC 177 CA :::::: CAC :::: ::U::: UG AC :::A:: 428 CACAu-------------UUUUUGGCACcCAAAAU-AAUAAA-AUGGACGGGAAGAGA-- 470 ->>>>>>::::::: 178 cugGccCACCCCuc 191 C :::: A C 471 CUUUUUAAGC---- 480 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #72693,sp|Z36100.1|SCYBR231C S.cerevisiae chromosome II reading frame ORF YBR231c ----isReversed: 1 ----hitSequence: AUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAACUGAAAUGACCUCAAUGAGGCUCAUUACCUUUUAAUUUGUUACAAUACACAUUUUUUGGCACCCAAAAUAAUAAAAUGGACGGGAAGAGACUUUUUAAGC hit 7 : 1808 1652 (rev) 91.82 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AU+ UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGU+UAA+A 1518 AUC---UCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUGUAACAA 1574 >>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<.<<<< 61 CUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggg.gggc 119 CUGA:AUG: CC:CA UG:GGC:CA UUA UUU+AA + G :: :::: 1575 CUGAAAUGA-CCUCAAUGAGGCUCA-----------UUACCUUUUAAUUU-GUUAcAAUA 1621 ----.<<<<<__>>>>>->>>>>>>>,,.<<<<<<-<<<<<<__________>>>>>>-- 120 Auca.guaGCUUGCuacugccccccCAC.GggUcgcCcuGgggUUGCACUACucCagGGC 177 CA :::::: CAC :::: ::U::: UG AC :::A:: 1622 CACAu-------------UUUUUGGCACcCAAAAU-AAUAAA-AUGGACGGGAAGAGA-- 1664 ->>>>>>::::::: 178 cugGccCACCCCuc 191 C :::: A C 1665 CUUUUUAAGC---- 1674 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #76404,sp|AL132798.2|SPAC222 S.pombe chromosome I cosmid c222. ----isReversed: 1 ----hitSequence: AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCGCUGAAAUCACCUCACUGAGGUGUUUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAAGCCUCUGGCUUGCUAUGCUUUCCGACACUGGUGUUCUUGCUAUUGCACUACUGGCAAGCGACGCCGAAUCUUC hit 8 : 16817 16627 (rev) 158.53 bits ::::::.<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCU.UCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU CU UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGUUUAAU 20825 AU-UCUcUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUC 20883 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 CUGA:AU ::CC:CA UG:GG:: ++ AUUAA UU UUUUUG++ +G G::GG:: 20884 GCUGAAAU-CACCUCACUGAGGUG-UUuCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAA 20941 <----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>>> 119 cAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCagG 175 : C U:GCUUGC:A :::CC::CAC:GGU+ +C:UG::+UUGCACUAC ::CA:G 20942 A-GCCuCUGGCUUGCUAUGcUUUCCGACACUGGUGUUCUUGCUAUUGCACUACuGGCAAG 21000 --->>>>>>::::::: 176 GCcugGccCACCCCuc 191 C +GCC:A C UC 21001 -CGACGCCGAAUCUUC 21015 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77618,sp|X55772.1|SPSNU2G S. pombe snu2 gene for U2 snRNA ----isReversed: 0 ----hitSequence: AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCGCUGAAAUCACCUCACUGAGGUGUUUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAAGCCUCUGGCUUGCUAUGCUUUCCGACACUGGUGUUCUUGCUAUUGCACUACUGGCAAGCGACGCCGAAUCUUC hit 9 : 223 413 (fwd) 158.53 bits ::::::.<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCU.UCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU CU UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGUUUAAU 223 AU-UCUcUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUC 281 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 CUGA:AU ::CC:CA UG:GG:: ++ AUUAA UU UUUUUG++ +G G::GG:: 282 GCUGAAAU-CACCUCACUGAGGUG-UUuCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAA 339 <----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>>> 119 cAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCagG 175 : C U:GCUUGC:A :::CC::CAC:GGU+ +C:UG::+UUGCACUAC ::CA:G 340 A-GCCuCUGGCUUGCUAUGcUUUCCGACACUGGUGUUCUUGCUAUUGCACUACuGGCAAG 398 --->>>>>>::::::: 176 GCcugGccCACCCCuc 191 C +GCC:A C UC 399 -CGACGCCGAAUCUUC 413 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #77697,sp|M23361.1|SPU2SNRNA Schizosaccharomyces pombe U2 small nuclear RNA, complete cds. ----isReversed: 0 ----hitSequence: AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCGCUGAAAUCACCUCACUGAGGUGUUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAAGCCUCUGGCUUGCUAUGCUUUCCGACACUGGUGUUCUUGCUAUUGCACUUACUGGCAAGCGACGCCGAA hit 10 : 1 186 (fwd) 147.78 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AU C UCU +GCCUUUUGGC+ AGAUCAAGUGUAGUAUCUGUUCUU:UCAGUUUAAU 1 AUUCUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUUCUUUUCAGUUUAAUCG 60 >>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<<- 61 CUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggcA 120 CUGA:AU ::CC:CA UG:GG:: ++ AUUAA UU UUUUUG++ +G G::GG::: 61 CUGAAAU-CACCUCACUGAGGUG-UUCCGAUUAAUCUUGUUUUUGGUUUGAGUUGGAAA- 117 ---.<<<<<__>>>>>-.>>>>>>>>,,.<<<<<<-<<<<<<__________..>>>>>> 121 uca.guaGCUUGCuacu.gccccccCAC.GggUcgcCcuGgggUUGCACUAC..ucCagG 175 C U:GCUUGC:A :::CC::CAC GG:::: C:UG::+UUGCACU+ ::CA:G 118 GCCuCUGGCUUGCUAUGcUUUCCGACACuGGUGUU-CUUGCUAUUGCACUUAcuGGCAAG 176 --->>>>>>::::::: 176 GCcugGccCACCCCuc 191 C::::CC 177 --CGACGCCGAA---- 186 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5158,sp|AC005719.2|AC005719 Drosophila melanogaster, chromosome 2L, region 38A5-38B4, BAC clone BACR48M05, complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 11 : 126731 126922 (fwd) 186.61 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 126731 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 126790 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 126791 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 126850 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::CACGGGU:: CC:GG:+UUGCA UAC :CC:G 126851 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACcGCCGG 126908 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 126909 GAuUUCGGCCCAAC---- 126922 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5158,sp|AC005719.2|AC005719 Drosophila melanogaster, chromosome 2L, region 38A5-38B4, BAC clone BACR48M05, complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 12 : 129890 129700 (rev) 177.57 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UAA+A 58452 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGC-UAACA 58510 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 58511 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 58570 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::CACGGGU:: CC:GG:+UUGCA UAC :CC:G 58571 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACcGCCGG 58628 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 58629 GAuUUCGGCCCAAC---- 58642 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5690,sp|AC009200.6|AC009200 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR32O12, complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 13 : 21011 21202 (fwd) 185.56 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 21011 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 21070 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 21071 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 21130 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 21131 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 21188 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 21189 GAuUUCGGCCCAAC---- 21202 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5690,sp|AC009200.6|AC009200 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR32O12, complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 14 : 17288 17097 (rev) 185.79 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 60627 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 60686 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 60687 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 60746 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G:AGCUUGCU:C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 60747 GU-GCUaGGAGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 60804 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 60805 GAuUUCGGCCCAAC---- 60818 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5714,sp|AC009340.4|AC009340 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR04E19, complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 15 : 5018 5209 (fwd) 185.79 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 5018 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 5077 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 5078 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 5137 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G:AGCUUGCU:C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 5138 GU-GCUaGGAGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 5195 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 5196 GAuUUCGGCCCAAC---- 5209 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5714,sp|AC009340.4|AC009340 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR04E19, complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 16 : 33740 33549 (rev) 185.79 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 163420 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 163479 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 163480 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 163539 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G:AGCUUGCU:C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 163540 GU-GCUaGGAGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 163597 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 163598 GAuUUCGGCCCAAC---- 163611 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5714,sp|AC009340.4|AC009340 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR04E19, complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 17 : 1295 1104 (rev) 185.56 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 195865 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 195924 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 195925 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 195984 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 195985 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 196042 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 196043 GAuUUCGGCCCAAC---- 196056 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #5917,sp|AC010707.16|AC010707 Drosophila melanogaster, chromosome X, region 14B-14B, BAC clone BACR06P10, complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGACUUCGGCCCAAC hit 18 : 95974 96165 (fwd) 186.61 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 95974 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 96033 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 96034 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 96093 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::CACGGGU:: CC:GG:+UUGCA UAC :CC:G 96094 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACcGCCGG 96151 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 96152 GAcUUCGGCCCAAC---- 96165 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6392,sp|AC084507.1|AC084507 Caenorhabditis briggsae cosmid G15B09, complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACGCUCGAAGGAAUAGAAUUGAACAGGAUCGCACAUUGAUAAAAAAGAAAAGCAUUGAAACGAACCAAAUUCUUUUUCUCC hit 19 : 7022 6873 (rev) 42.37 bits ::::::<<<.-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<______ 1 AUACCUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAU 58 AU++CUUCU CGGC:U UU:GCUAAGAUCAA GUGUAGUAUCUGUUCUUA:C:: UUAA+ 37878 AUCGCUUCUuCGGCUUAUUAGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCGUAUUAAC 37937 __>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,.,,,,,,,,,,,,,,<<<<<< 59 AUCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUU.uAUUUUUgAAggGgGggggg 117 U::G:UAU : :C G: : A+ ++AUU AA AU A+ G + 37938 CUACGGUAUACGCUC-----GAAGGAAUAGAAUUGAACAgGAUCGCACAUUGAU------ 37986 <<----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________.>>>>>> 118 gcAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUAC.ucCagG 175 A A G::::G : U:G++ AC A C:A : 37987 ---AAAa---------------------AAGAAAAG-CAUUGAA----ACGAAc-CAAAU 38016 --->>>>>>::::::: 176 GCcugGccCACCCCuc 191 CU::::C CC 38017 -UCUUUUUCUCC---- 38027 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6483,sp|AC084598.1|AC084598 Caenorhabditis briggsae cosmid G42J05, complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUGCACUCGAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCUAGGAAAGACUCGGGGCUUGCUCCGACUUUCCAAGGGUCGUCCCGGCGUUGCACUGCUGCCGGGCUCGGCCCAGUCCCU hit 20 : 10649 10839 (fwd) 157.15 bits ::::::<<<.-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<______ 1 AUACCUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAU 58 AU++CUUCU CGGC:U UU:GCUAAGAUCAA GUGUAGUAUCUGUUCUUA:C:: UUAA+ 10649 AUCGCUUCUuCGGCUUAUUAGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCGUAUUAAC 10708 __>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,.<<<< 59 AUCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGg.Gggg 115 U::G:UAU ::C:C A G:G:: AA A UU A U AUUUUUG+A + GG:: 10709 CUACGGUAUGCACUCGAA-UGAGUGUAAuaAAGGUU-AUAUGAUUUUUGGAACCUaGGAA 10766 <<<<----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>> 116 gggcAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCag 174 :G:C++ G::GCUUGC::C G:C:::CCA GGGUC:+ CC:G:G UUGCACU CU:C:G 10767 AGACUC--GGGGCUUGCUCC-GACUUUCCAAGGGUCGUcCCGGCG-UUGCACUGCUGCCG 10822 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 GG +:GGCCCA CC++ 10823 GGc-UCGGCCCAGUCCCU 10839 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6955,sp|AC116989.2|AC116989 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUCUUGAAGCGUAAUAGCUUUAAUCAAGUGUAGUAUCUGUUCUAGAACGCUUAAAAUCGUUCUGCUAUCUAAGUGAUAGCUUUCGAAUUUAAUUUUAUUUUUUAUUCGAGGUUUUUAGAUGUUAUUAUUAUAAUAUCGGCUUGCCUUUAUUCAUUACAUCUAAAGUUGUAUUCCCUCUGUAUCGCACCAUUUCAGAGUCAAUAAA hit 21 : 3586 3793 (fwd) 35.08 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AU+ U:: :GC U U GC: ::AUCAAGUGUAGUAUCUGUUCU : ::G UUAA AU 3586 AUCUUCUUGAAGCGUAAUAGCUUUAAUCAAGUGUAGUAUCUGUUCUAGAACGCUUAAAAU 3645 >>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,....,,,,,.<< 61 CUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgA....AggGg.Gg 113 C:: : G::::C:A :G::::C++ GA+ UUAA UUUAUUUUU+A AGG + :: 3646 CGUUCU-GCUAUCUAAGUGAUAGCUUucGAAUUUAAUUUUAUUUUUUAuucgAGGUUuUU 3704 <<<<<<----.........<<<<<__>>>>>-.......>>>>>>>>,,..<<<<<<-<< 114 gggggcAuca.........guaGCUUGCuacu.......gccccccCAC..GggUcgcCc 155 :G::G + ++ :GCUUGC: U C::C:::A :::: CC: 3705 AGAUGUUAUUauuauaauaUCGGCUUGCCUUUauucauuACAUCUAAAGuuGUAUUCCCU 3764 <<<<__________..>>>>>>--->>>>>>::::::: 156 uGgggUUGCACUAC..ucCagGGCcugGccCACCCCuc 191 ::G++U GCAC A C:::G + :::: A 3765 CUGUAUCGCACCAUuu-CAGAG--UCAAUAAA------ 3793 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #6955,sp|AC116989.2|AC116989 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. ----isReversed: 0 ----hitSequence: AUCUUCUUGAAGCGUAAUAGCUUUAAUCAAGUGUAGUAUCUGUUCUAGAACGCUUAAAAUCGUUCUGCUAUCUAAGUGGUAGCUUUCGAAUUUAAUUUUAUUUUUUAUUCGAGGUUUUUAGAUGUUAUUAUAAUAAUAUAGGCUUGCCUUUAUUCAUUACAUCUUAAGUUGUAUUCGCUCUGUAUCGCACCAUUUCAGAGUCAAUAAAA hit 22 : 7570 7778 (fwd) 32.00 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AU+ U:: :GC U U GC: ::AUCAAGUGUAGUAUCUGUUCU : ::G UUAA AU 7570 AUCUUCUUGAAGCGUAAUAGCUUUAAUCAAGUGUAGUAUCUGUUCUAGAACGCUUAAAAU 7629 >>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,.<<<<.< 61 CUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGg.Gggg.g 116 C:: : G::: C:A :G :::C++ GA+ UUAA UUUAUUUUU+A+ G G: 7630 CGUUCU-GCUAUCUAAGUGGUAGCUUucGAAUUUAAUUUUAUUUUUUAUUCGAgGUUUuU 7688 <<<----............<<<<<__>>>>>-.>>>>>>>>,,.........<<<<<<-< 117 ggcAuca............guaGCUUGCuacu.gccccccCAC.........GggUcgcC 154 : :+ ++ ::GCUUGC:: U : : :CA :: : GC: 7689 AGAUGUUauuauaauaauaUAGGCUUGCCUUUaUUCAUUACAUcuuaaguugUAUUCGCU 7748 <<<<<__________>>>>>>--->>>>>>::::::: 155 cuGgggUUGCACUACucCagGGCcugGccCACCCCuc 191 CUG : U GCAC A : CAG: U : ::A 7749 CUGUA-UCGCACCAUUUCAGA--GUCAAUAAAA---- 7778 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7010,sp|AC137988.2|AC137988 Trypanosoma cruzi chromosome 3 clone cosmids 1o17, 1m17, 1b21, 2n11 strain Brener, complete sequence. ----isReversed: 1 ----hitSequence: AUAUCUUCUCGGCCAUUUAGCUAAGAUCAAGUUUUCAAGCUGUUCUUAUCAGAUUAAUUCCUGAUAUGGGCUUCGUCCCAGGAAUAGAAACCGCUGAUCUCUCAAGUGUUCCUCCGGAGUUUCGCGUGUCCGGAUGGAGCGCUUCCUU hit 23 : 33725 33578 (rev) 80.85 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AUA CUUCUCGGC UUU GCUAAGAUCAAGU U A CUGUUCUUAUCAG UUAAU 72140 AUAUCUUCUCGGCCAUUUAGCUAAGAUCAAGUUUUCAAGCUGUUCUUAUCAGAUUAAUUC 72199 >>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<<- 61 CUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggcA 120 CUGAUAU :G: : U+ : :C: A G++AU +A UGA+ + 72200 CUGAUAU-GGGCU--UC-GUCCC-A-GGAAUA---GAAACCGCUGAUCUC---------- 72240 ---.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>---> 121 uca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCcu 179 + A :G::C: :C:GG:GUU C C + :CC:G: +: 72241 -UCa---------------------AGUGUUCC-UCCGGAGUUUCGCGUGUCCGGA--UG 72275 >>>>>::::::: 180 gGccCACCCCuc 191 G::C: CCU+ 72276 GAGCGCUUCCUU 72287 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7517,sp|AE003501.3|AE003501 Drosophila melanogaster chromosome X section 53 of 74 of the complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGACUUCGGCCCAAC hit 24 : 245649 245840 (fwd) 186.61 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 245649 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 245708 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 245709 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 245768 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::CACGGGU:: CC:GG:+UUGCA UAC :CC:G 245769 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACcGCCGG 245826 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 245827 GAcUUCGGCCCAAC---- 245840 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7655,sp|AE003639.3|AE003639 Drosophila melanogaster chromosome 2L section 48 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 25 : 95118 95309 (fwd) 185.79 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 95118 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 95177 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 95178 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 95237 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G:AGCUUGCU:C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 95238 GU-GCUaGGAGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 95295 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 95296 GAuUUCGGCCCAAC---- 95309 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7655,sp|AE003639.3|AE003639 Drosophila melanogaster chromosome 2L section 48 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGAGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 26 : 123840 123649 (rev) 185.79 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 137936 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 137995 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 137996 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 138055 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G:AGCUUGCU:C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 138056 GU-GCUaGGAGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 138113 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 138114 GAuUUCGGCCCAAC---- 138127 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7655,sp|AE003639.3|AE003639 Drosophila melanogaster chromosome 2L section 48 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 27 : 91395 91204 (rev) 185.56 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 170381 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 170440 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 170441 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 170500 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::C+CGGGU:: CC:GG:+UUGCA UAC :CC:G 170501 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCGCGGGUUGGCCCGGUAUUGCAGUACcGCCGG 170558 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 170559 GAuUUCGGCCCAAC---- 170572 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7680,sp|AE003664.2|AE003664 Drosophila melanogaster chromosome 2L section 73 of 83 of the complete sequence. ----isReversed: 0 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 28 : 80611 80801 (fwd) 177.57 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UAA+A 80611 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGC-UAACA 80669 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 80670 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 80729 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::CACGGGU:: CC:GG:+UUGCA UAC :CC:G 80730 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACcGCCGG 80787 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 80788 GAuUUCGGCCCAAC---- 80801 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7680,sp|AE003664.2|AE003664 Drosophila melanogaster chromosome 2L section 73 of 83 of the complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUGGAAUCAGACGGAGUGCUAGGGGCUUGCUCCACCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACCGCCGGGAUUUCGGCCCAAC hit 29 : 83770 83579 (rev) 186.61 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 AU++CUUCUCGGCCUU UGGCUAAGAUCAA GUGUAGUAUCUGUUCUUAUCAG UUAA+A 182512 AUCGCUUCUCGGCCUUAUGGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAACA 182571 _>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGggggg 117 UCUGAUA U:C:CCAUUGG:G:A AA AU UUAAA U AUUUUUG+A + G:: G: 182572 UCUGAUAGUUCCUCCAUUGGAGGACAAcaAAUGUUAAACUGAUUUUUGGAAUCAGACGGA 182631 <<----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________.>>>>> 118 gcAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUAC.ucCag 174 G C+ G::GCUUGC::C C:C ::CACGGGU:: CC:GG:+UUGCA UAC :CC:G 182632 GU-GCUaGGGGCUUGCUCC-aCCUCUGUCACGGGUUGGCCCGGUAUUGCAGUACcGCCGG 182689 >-.-->>>>>>::::::: 175 GG.CcugGccCACCCCuc 191 G+ +::GCCCA C 182690 GAuUUCGGCCCAAC---- 182703 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7889,sp|AE014841.1|AE014841 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence. ----isReversed: 1 ----hitSequence: ACCCUUCUCGGCCUCUUGGCUAAGAUCAAUUUGUAGUACCUGUUCUUAUCAGCGUGAUAGCUGAUAUGGUCUCAAUAGAGGCCUUAUCAAUUUCACAAAAAUUUUUGAUAGGGGAAAGGAUAAUUUGAAGCUUGCUUCUUAUAACCUUUCGCGCGUUGCCUUACCCUUGCACUAAAGGUUUGUACAGUGCACCCUUA hit 30 : 200154 199958 (rev) 127.82 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A +CCUUCUCGGCCU UUGGCUAAGAUCAA UGUAGUA CUGUUCUUAUCAG +U AUA 52267 A-CCCUUCUCGGCCUCUUGGCUAAGAUCAAuUUGUAGUACCUGUUCUUAUCAGCGUGAUA 52325 _>>>>>>,<<<<<<<___>>>>>>>,,...,,,,,,,,,,,,,,,,,,,,,,,,,<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa...GAuAUUAAaUUuAUUUUUgAAggGgGgggg 116 CUGAUAUG: C:C:AU :G:G :C++ AU U A A +AUUUUUGA+ GGGG:::G 52326 GCUGAUAUGGUCUCAAU-AGAGGCCUUaucAAUUUCACAAAAAUUUUUGAUAGGGGAAAG 52384 <<<----.<<<<<__>>>>>-...>>>>>>>>,,<<<<<<-.<<<<<<__________>> 117 ggcAuca.guaGCUUGCuacu...gccccccCACGggUcgc.CcuGgggUUGCACUACuc 171 G: A ++ G:AGCUUGCU:CU :CC:::C+CG: U::C ::: : UUGCACUA : 52385 GAUAAUUuGAAGCUUGCUUCUuauAACCUUUCGCGCGUUGCcUUACCC-UUGCACUAAAG 52443 >>>>-.-->>>>>>::::::: 172 CagGG.CcugGccCACCCCuc 191 :::G ::G :CACCC U 52444 GUUUGu-ACAGUGCACCCUUA 52463 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #7904,sp|AE017170.1|AE017170 Trypanosoma brucei chromosome 2, section 4 of 4 of the complete sequence. ----isReversed: 0 ----hitSequence: AUAUCUUCUCGGCUAUUUAGCUAAGAUCAAGUUAUUAAACUGUUCUUAUCAGAGUAACUCCUGAUACGGGCCUUUGGCCCAAGGAUCAAAACUGUUGGCUGUCCCGCGUUCUUCCGGGGUUCCACUUGUCCGGAUGGAGCGCGAC hit 31 : 123503 123647 (fwd) 97.53 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AUA CUUCUCGGC: UUU:GCUAAGAUCAAGU A CUGUUCUUAUCAG +UAA+ 123503 AUAUCUUCUCGGCUAUUUAGCUAAGAUCAAGUUAUUAAACUGUUCUUAUCAGAGUAACUC 123562 >>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 61 CUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 CUGAUA+ G::CC UUGG::C AA GAU +A U U++ +G+ 123563 CUGAUAC--GGGCCUUUGGCCC--AAgGAU------CAAAACUGUUGGCUGU-------- 123604 ----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>---> 120 AucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCcu 179 + CG:GU::+:C:GGGGUU CACU+ UCC:G: : 123605 -C-----------------------CCGCGUUCUUCCGGGGUUCCACUUGUCCGGA-UGG 123639 >>>>>::::::: 180 gGccCACCCCuc 191 :GC:C C 123640 AGCGCGAC---- 123647 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11713,sp|AF045635.1|AF045635 Caenorhabditis elegans cosmid C05G6, complete sequence. ----isReversed: 1 ----hitSequence: AUCGCUUCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUAUUAACCUACGGUAUACACUCAAAUGAGUGUAAUAAAGGUUAUAUGAUUUUUGGAACCCUGGGAAGACUCGGGGCUUGCUUCGACUUCCCAAGGGUCGUCCUGGCGUUGCACUUCUGCCGGGCUCGGCCCAGUCCCC hit 32 : 5423 5233 (rev) 151.16 bits ::::::<<<.-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<______ 1 AUACCUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAU 58 AU++CUUCU CGGC:U UU:GCUAAGAUCAA GUGUAGUAUCUGUUCUUA:C:: UUAA+ 9653 AUCGCUUCUuCGGCUUAUUAGCUAAGAUCAAaGUGUAGUAUCUGUUCUUAUCGUAUUAAC 9712 __>>>>>>,<<<<<<<___>>>>>>>,,..,,,,,,,,,,,,,,,,,,,,,,,,,<<<<< 59 AUCUGAUAUgugcccCAUuGgggcacAa..GAuAUUAAaUUuAUUUUUgAAggGgGgggg 116 U::G:UAU:::C:C:A :G:G:::AA A UUA AU + UUUU GAA +GGG:: 9713 CUACGGUAUACACUCAAA-UGAGUGUAAuaAAGGUUAUAUGAUUUUUGGAACCCUGGGAA 9771 <<<----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>> 117 ggcAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagG 175 G:C++ G::GCUUGC::C G:C::CCCA GGGUC:+ C::G:G UUGCACU+CU:C::G 9772 GACUC--GGGGCUUGCUUC-GACUUCCCAAGGGUCGUcCUGGCG-UUGCACUUCUGCCGG 9827 -.-->>>>>>::::::: 176 G.CcugGccCACCCCuc 191 G +:GGCCCA CC+C 9828 Gc-UCGGCCCAGUCCCC 9843 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #11928,sp|AF047722.1|AF047722 Trypanosoma brucei rhodesiense adenylate kinase gene, complete cds, and U2 snRNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUAUCUUCUCGGCUAUUUAGCUAAGAUCAAGUUAUUAAACUGUUCUUAUCAGAGUAACUCCUGAUACGGGCCUUUGGCCCAAGGAUCAAAACUGUUGCCUGUCCCGCGUUCUUCCGGGGUUCCACUUGUCCGGACGGAGCGCGAC hit 33 : 3099 3243 (fwd) 99.57 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AUA CUUCUCGGC: UUU:GCUAAGAUCAAGU A CUGUUCUUAUCAG +UAA+ 3099 AUAUCUUCUCGGCUAUUUAGCUAAGAUCAAGUUAUUAAACUGUUCUUAUCAGAGUAACUC 3158 >>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 61 CUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 CUGAUA+ G::CC UUGG::C AA GAU +A U U++ +G+ 3159 CUGAUAC--GGGCCUUUGGCCC--AAgGAU------CAAAACUGUUGCCUGU-------- 3200 ----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>---> 120 AucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCcu 179 + CG:GU::+:C:GGGGUU CACU+ UCC:G: C : 3201 -C-----------------------CCGCGUUCUUCCGGGGUUCCACUUGUCCGGA-CGG 3235 >>>>>::::::: 180 gGccCACCCCuc 191 :GC:C C 3236 AGCGCGAC---- 3243 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #15491,sp|AF095839.1|AF095839 Entosiphon sulcatum trans-spliced leader SL, 5S ribosomal RNA, U5 snRNA, U1 snRNA, and U2 snRNA genes, complete sequence. ----isReversed: 1 ----hitSequence: AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUUUCUGAUAUAUCGGACACUGUCCGAUUGAGAAAUUAAACUAAUUUUUUGAUGGGGGCAAGGGGUUCCCCUCGUGCUUGCGCGAGUCCCUUGCCACGGGUUGCCCUGCUAUUGCACUACCGGCAGGCGCGGCCCAACCCAC hit 34 : 1586 1389 (rev) 209.32 bits ::::::<<<-<<<<____>>>>->>>,,,,,,,,,,,,,,,,,,,,<<<<<<________ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU 60 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAG UUAAU U 936 AUACCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUUU 995 >>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<.<<< 61 CUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGggg.ggg 118 CUGAUAU:U::::CA UG::::A:+ GA+AUUAAA U+AUUUUU++A GGGGG:: GGG 996 CUGAUAUAUCGGACACUGUCCGAUUGaGAAAUUAAACUAAUUUUUUGAUGGGGGCAaGGG 1055 <----...<<<<<__>>>>>-.>>>>.>>>>,,<<<<<<-<<<<<<__________.>>> 119 cAuca...guaGCUUGCuacu.gccc.cccCACGggUcgcCcuGgggUUGCACUAC.ucC 172 :+UC :: GCUUGC :: :CCC ::CCACGGGU::CCCUG::+UUGCACUAC ::C 1056 GUUCCccuCGUGCUUGCGCGAgUCCCuUGCCACGGGUUGCCCUGCUAUUGCACUACcGGC 1115 >>>--->>>>>>::::::: 173 agGGCcugGccCACCCCuc 191 AGG C ::GCCCA CCC+C 1116 AGG-CGCGGCCCAACCCAC 1133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16448,sp|AF110878.1|AF110878 Tasmanipatus barretti U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCCCGCAAUUGUGGGCCAGAAUAUUAAACUGAUUUUUGGAAUUGGGUGGAGAGCUCGGGGCUUGCUCCACCUCCACCACGGGUUGGC hit 35 : 2 131 (fwd) 24.74 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,.<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGg.Gggggg 117 UCUGAUA+G::C+C:AU :G+G::C A AUAUUAAA U AUUUUUG+A + G 37 UCUGAUACGCCCGCAAU-UGUGGGCCAgAAUAUUAAACUGAUUUUUGGAAUUGg------ 89 <<----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>- 118 gcAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG 176 + A : UC: :G+: UUGC C AC:+C: + 90 ---GUGg---------------------AGAGCUCG---GGGC-UUGCUCCACCUCC--A 119 .-->>>>>>::::::: 177 .CcugGccCACCCCuc 191 C :GG : C 120 cCACGGGUUGGC---- 131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16449,sp|AF110879.1|AF110879 Oroperipatus corrodai U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCUCCCUAAUGGGGGCCAGAAUAUUAAACUGAUUUUUGGAAUUGGGUGGAGAGCUAGGGGCUUGCUCCCCCUCCGCCACC hit 36 : 2 124 (fwd) 32.15 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 UCUGAUA+G CCC A U GGG CA AUAUUAAA U AUUUUUG+A + G 37 UCUGAUACGCUCCCUAAUGGGGGCCAGAAUAUUAAACUGAUUUUUGGAAUUG-------- 88 ----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>---> 120 AucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCcu 179 + GG::+:C ::GGG UUG CUCC:: +: 89 -G-----------------------GUGGAGAGCUAGGGGCUUG-----CUCCCCC--UC 117 >>>>>::::::: 180 gGccCACCCCuc 191 ::CCACC 118 -CGCCACC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16452,sp|AF110882.1|AF110882 Craterostigmus tasmanianus U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCCAUUGGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAUCAGGCGGGGUGUUUAGGGGCUUGCUCCACCCCCGCCACUGGUUGGC hit 37 : 2 133 (fwd) 33.17 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G: CCCCAUUGGGG :C A AUAUUAAA U AUUUUUG+A + 37 UCUGAUACGGUCCCCAUUGGGGGCCCAgAAUAUUAAACUGAUUUUUGGAAUCA------- 89 <----.<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>- 119 cAuca.guaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUACucCagGG 176 C + :U:: :GG: UUGC C AC:CC: G 90 -GGCGg-------------g--------GUGUUUAG---GGGC-UUGCUCCACCCCC--G 121 .-->>>>>>::::::: 177 .CcugGccCACCCCuc 191 C ::G: C 122 cCACUGGUUGGC---- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16453,sp|AF110883.1|AF110883 Schizoribautia sp. U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCUCAUUGAGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACAGGUGGGGUGCUCGGGGCUUGCUCCACCCCCGCCACGGGUUGGC hit 38 : 2 132 (fwd) 34.92 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G: CC:CAUUG:GG :C A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGGUCCUCAUUGAGGGCCCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-- 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGC 177 CA + ::C C:GG+ UUGC C AC+CC:G C 87 --ACAg---------------------GUGGGGUGCUCGGGGCUUGCUCCACCCCCGC-C 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: C 123 ACGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16454,sp|AF110884.1|AF110884 Allothereua maculata U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACAGUCCCNAUUGGGGACCCAGAAUAUUAAACUGAUUUUUGGCAUUCGGCGGGGUGCUAGGGGCUUGCUCCACCCCCGCCACGAGUUGGC hit 39 : 2 132 (fwd) 29.43 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,.,,,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgA.AggGgGggggg 117 UCUGAUA+:::CCC AUU GGG::: A AUAUUAAA U AUUUUUG+ A + G 37 UCUGAUACAGUCCCNAUUGGGGACCCAgAAUAUUAAACUGAUUUUUGGcAUUCG------ 90 <<----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-- 118 gcAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGC 177 +C ::C ::GG+ UUGC C AC+CC:: C 91 ---------------------------GCGGGGUGCUAGGGGCUUGCUCCACCCCCGC-C 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: C 123 ACGAGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16455,sp|AF110885.1|AF110885 Cormocephalus sp. U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGCCUCCAUUGGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAAUUGGCGGGGUGCUCGGGGCUUGCUCCACCCCUGCCACGGGUUGGC hit 40 : 2 132 (fwd) 33.40 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::C CCAUUGG G::C A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGGCCUCCAUUGGGGGCCCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>- 119 cAuca.guaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGG 176 ++ +C ::C :::GG UUGC U C CC:::G 87 --AUUg---------------------GCGGGGUGCuCGGGGC-UUGC--UCCACCCCUG 120 .-->>>>>>::::::: 177 .CcugGccCACCCCuc 191 C :: C 121 cCACGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16456,sp|AF110886.1|AF110886 Hanseniella sp. AM-1999 U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACAGUCCUCAUAGAGGGCUCAGUAUAUUAACCUGAUUUUUGAACUCUGGCGGAGUGAAAGGGGCUUGCUCCACCUCUGCCGCGGGUUGGC hit 41 : 2 132 (fwd) 21.06 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+:: CC:CAU G:GG :: A AUAUUAA+ U AUUUUUGAA + + 37 UCUGAUACAGUCCUCAUAGAGGGCUCAgUAUAUUAACCUGAUUUUUGAACUCU------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 +C : :: : G++ UUGC C AC++C : C 90 --G-----------------------GCGGAGUGAAAGGGGCUUGCUCCACCUCUGC-CG 123 >>>>>>::::::: 179 ugGccCACCCCuc 191 :: : C 124 CGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16457,sp|AF110887.1|AF110887 Pauropodinae sp. U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCUCAUUGAGGGACCAGAAUAUUAAACUGAUUUUUGGAACUAGGCGGAAUGUUCGGGGCUUGCUCCACCUCUGCCGCGGGUUGGC hit 42 : 2 132 (fwd) 35.14 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CC:CAUUG:GG:AC A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGUCCCUCAUUGAGGGACCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-- 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGC 177 ++A +C : ::+ C G++ UUGC C AC++C G C 87 --CUAg---------------------GCGGAAUGUUCGGGGCUUGCUCCACCUCUGC-C 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: : C 123 GCGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16458,sp|AF110888.1|AF110888 Epicyliosoma sp. AMcL-1999 U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCUCAUUGAGGGACCAGAAUAUUAAACUGAUUUUUGGAACUAGGCGGAGUGUUCGGGGCUUGCUCCACCUCUGCCACGGGUUGGC hit 43 : 2 132 (fwd) 36.17 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CC:CAUUG:GG:AC A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGUCCCUCAUUGAGGGACCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-- 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGC 177 ++A +C : ::+ C G++ UUGC C AC++C G C 87 --CUAg---------------------GCGGAGUGUUCGGGGCUUGCUCCACCUCUGC-C 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: : C 123 ACGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16459,sp|AF110889.1|AF110889 Unixenus mjobergi U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUCUCUGAUACGCCCCCCAUUGGGGGGCCAGAUGAUUAAACUGGUUUUUGGAACAGGGCGGAGUGCUAGGGGCUUGCUCCACCUCUGCCACGGGUUGGC hit 44 : 2 132 (fwd) 25.55 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAU 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUC 36 _>>>>>>,<<<<<<<___>>>>>>>,,,,,.,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAu.AUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CCCCAUUGGGG::C AGAU AUUAAA U UUUUUG+A G 37 UCUGAUACGCCCCCCAUUGGGGGGCCAGAUgAUUAAACUGGUUUUUGGAACAG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-.- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG.C 177 +C : ::C:: GG: UUGC U C:CC ::G C 90 --G-----------------------GCGGAGUGCUAGGGGCUUGC--UCCACCUCUGcC 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: : C 123 ACGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16462,sp|AF110892.1|AF110892 Tricholepidion gretschi U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUGUGCAUUGCACAUCCAGAAUAUUAAACUGAUUUUUGGAUUUUGGCGGAGUGUUAGGGGCUUGCUCCACCUCUGCCGCGGGUUGGC hit 45 : 2 132 (fwd) 27.46 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G:::: CAUUG ::::C A AUAUUAAA U AUUUUUG+A + + 37 UCUGAUACGAUGUGCAUUGCACAUCCAgAAUAUUAAACUGAUUUUUGGAUUUU------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-.- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG.C 177 +C : ::+:: GG: UUGC U C:CC ::G C 90 --G-----------------------GCGGAGUGUUAGGGGCUUGC--UCCACCUCUGcC 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: : C 123 GCGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16463,sp|AF110893.1|AF110893 Allomachilis froggarti U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUCCUCAUCGAGGAUCCAGAAUAUUAAACUUAUUUUUGGAGAAUGACGGAGUGUUAGGGGCUUGCUCCACCUCUGUCGCGGGUUGGC hit 46 : 2 132 (fwd) 33.25 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CC:CAU+G:GG::C A AUAUUAAA UUAUUUUUG+AG 37 UCUGAUACGAUCCUCAUCGAGGAUCCAgAAUAUUAAACUUAUUUUUGGAG---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-- 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGC 177 + AC : ::+:: G++ UUGC C AC++C :: C 87 --AAUg---------------------ACGGAGUGUUAGGGGCUUGCUCCACCUCUGU-C 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: : C 123 GCGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16464,sp|AF110894.1|AF110894 Atalophlebia sp. U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCUCAUUGCUGGACCAGAAUAUUAAACUGAUUUUUGGAAACAGCUGGAGUGCUAGGAGCUUGCUCCACCUCCGGCACGGGUUGGC hit 47 : 2 132 (fwd) 29.48 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:C CAUUG G:AC A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGUCCCUCAUUGCUGGACCAgAAUAUUAAACUGAUUUUUGGAAACA------- 89 <----<<<<<__>>>>>->>>>>>>>,,.<<<<<<-<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCAC.GggUcgcCcuGgggUUGCACUACucCagGGC 177 +C : ::C ::G:+ UUGC C AC+:C:: C 90 --------------------------GCuGGAGUGCUAGGAGCUUGCUCCACCUCCGG-C 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: : C 123 ACGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16465,sp|AF110895.1|AF110895 Lasionectes exleyi U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCUCCGCAUCGCGGAGCCAGAAUAUUAAACUGAUUUUUGAAACUAGGUGGGGUGUUCGGGGCUUGCUCCACCCCUGCCACGGGUUGGC hit 48 : 2 132 (fwd) 31.32 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CC CAU+G GG::C A AUAUUAAA U AUUUUUGAA 37 UCUGAUACGCUCCGCAUCGCGGAGCCAgAAUAUUAAACUGAUUUUUGAAA---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>- 119 cAuca.guaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGG 176 ++A + ::+ :::GG UUGC U C CC:::G 87 --CUAg---------------------GUGGGGUGUuCGGGGC-UUGC--UCCACCCCUG 120 .-->>>>>>::::::: 177 .CcugGccCACCCCuc 191 C :: C 121 cCACGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16466,sp|AF110896.1|AF110896 Derocheilocaris remanei U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACACUCCCCAUUGGGGAGUCAGAAUAUUAAACUGAUUUUUGUAACCUGACGGAGUGCUCGGGGCUUGCUCCACCUCUGUCGCGGGUUGGC hit 49 : 2 132 (fwd) 34.83 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+:::CCCCAUUGGGG::: A AUAUUAAA U AUUUUUG A + 37 UCUGAUACACUCCCCAUUGGGGAGUCAgAAUAUUAAACUGAUUUUUGUAACCU------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 AC : ::C:C G++ UUGC C AC++C G: C 90 --G-----------------------ACGGAGUGCUCGGGGCUUGCUCCACCUCUGU-CG 123 >>>>>>::::::: 179 ugGccCACCCCuc 191 :: : C 124 CGGGUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16467,sp|AF110897.1|AF110897 Nebalia sp. U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUCCCCAUGCGGGAUCAACGAUAUUAAACUGAUUUUUGGCCUUUGGCGAAGUGCUAGGAGCUUGCUCCACCUUUGCCGCGGAUCAGC hit 50 : 2 132 (fwd) 37.14 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CCC AU GGG::CAA GAUAUUAAA U AUUUUUG+ + + 37 UCUGAUACGAUCCCCAUGCGGGAUCAAcGAUAUUAAACUGAUUUUUGGCCUUU------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-.- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG.C 177 +CG:: ::C:: G : UUGC U C: C ::G C 90 --G-----------------------GCGAAGUGCUAGGAGCUUGC--UCCACCUUUGcC 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 :: ::CA C 123 GCGGAUCAGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16468,sp|AF110898.1|AF110898 Triops australiensis U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUUCCCAUNGUGGAUCCAGAAUAUUAAACUGAUUUUUGGAAACUGGCGGAGUGCUGGGGCUUGCUCCACCUCCGCCGC hit 51 : 2 123 (fwd) 23.88 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G:: C CAU G G ::C A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGAUUCCCAUNGUGGAUCCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----<<<<<__>>>>>->>>>>>>>,,..<<<<<<-<<<<<<__________>>>>>>- 119 cAucaguaGCUUGCuacugccccccCAC..GggUcgcCcuGgggUUGCACUACucCagGG 176 AC G:G:::+ CUGGGG U U CUCCA 87 --------------------------ACugGCGGAGUGCUGGGGCU----UGCUCCA--- 113 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 C:::C:C C 114 -CCUCCGCCGC---- 123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16469,sp|AF110899.1|AF110899 Branchianella sp. 2 U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCUAUAUGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACCGGGGGGAUGUCGGGGCUUGCUCCGCUCCCUCCACGC hit 52 : 2 125 (fwd) 26.25 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G: CCC:AU :GGG :C A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGGUCCCUAUAUGGGGCCCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----<<<<<__>>>>>->>>>>>>>,,.<<<<<<-.<<<<<<__________>>>>>>- 119 cAucaguaGCUUGCuacugccccccCAC.GggUcgc.CcuGgggUUGCACUACucCagGG 176 AC GG +: : :GGGG U U CUCC: : 87 --------------------------ACcGGGGGGAuGUCGGGGCU----UGCUCCGCU- 115 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 C:+ CC C 116 -CCCUCCACGC---- 125 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16470,sp|AF110900.1|AF110900 Branchianella sp. 3 U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCUAUAUGGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACCGGGGGGAUGUCGGGGCUUGCUCCGCUCCCUCCACGC hit 53 : 2 125 (fwd) 26.25 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G: CCC:AU :GGG :C A AUAUUAAA U AUUUUUG+A 37 UCUGAUACGGUCCCUAUAUGGGGCCCAgAAUAUUAAACUGAUUUUUGGAA---------- 86 <----<<<<<__>>>>>->>>>>>>>,,.<<<<<<-.<<<<<<__________>>>>>>- 119 cAucaguaGCUUGCuacugccccccCAC.GggUcgc.CcuGgggUUGCACUACucCagGG 176 AC GG +: : :GGGG U U CUCC: : 87 --------------------------ACcGGGGGGAuGUCGGGGCU----UGCUCCGCU- 115 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 C:+ CC C 116 -CCCUCCACGC---- 125 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16471,sp|AF110901.1|AF110901 Kempina mikado U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCCCCAUGUGGGGCCUACGAUAUUAAUCUGAUUUUUGUACUUAGGCGAAGUGCUCGGGGCUUGCUCCACCUUUGCCACGGAUUGGC hit 54 : 2 132 (fwd) 30.66 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G: CCC:AU :GGG :C+A GAUAUUAA U AUUUUUG A 37 UCUGAUACGGUCCCCAUGUGGGGCCUAcGAUAUUAAUCUGAUUUUUGUAC---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-. 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG. 176 U+A +C :: ::C: GG: UUGC U C:CC :G 87 --UUAg---------------------GCGAAGUGCUCGGGGCUUGC--UCCACCUUUGc 121 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 C :: :: C 122 CACGGAUUGGC---- 132 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16472,sp|AF110902.1|AF110902 Limulus polyphemus U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUUCCCAUUGGGGACCAUGAUAUUAAACUUAUUUUUGUGAGGCGGCGGGGUGCUUGGAGCUUGCUCCACUCCUGCCACG hit 55 : 2 124 (fwd) 41.02 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,.,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUg.AAggGgGgggggg 118 UCUGAUA+G:: CCCAUUGGG ::CA+GAUAUUAAA UUAUUUUUG +AGG G 37 UCUGAUACGGUUCCCAUUGGGGACCAUGAUAUUAAACUUAUUUUUGuGAGGCG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 +CG G::G : UGG:G U U C:CCA : CC 90 --------------------------GCGGGGUG-CUUGGAGCU----UGCUCCACU-CC 117 >>>>>>::::::: 179 ugGccCACCCCuc 191 U::C C 118 UGCCACG------ 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16474,sp|AF110904.1|AF110904 Equitius sp. U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGCCCCCAUCGGGGGCCAAGAUAUUAAUCUUAUUUUUGUCAUGCGGCGGAGAGCUUGAGGCUUGCUUCACCUCCGCCAC hit 56 : 2 123 (fwd) 39.02 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 UCUGAUA+G::CCCCAU+GGGG::CAAGAUAUUAA UUAUUUUUG +G 37 UCUGAUACGGCCCCCAUCGGGGGCCAAGAUAUUAAUCUUAUUUUUGUCAUG--------- 87 ----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>--- 120 AucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGCc 178 G:G::: C UG:GG U U CU:CA C 88 -------------------------CGGCGGAGAgCUUGAGGCU----UGCUUCA----C 114 >>>>>>::::::: 179 ugGccCACCCCuc 191 :::C:C C 115 CUCCGCCAC---- 123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16475,sp|AF110905.1|AF110905 Lychas marmoreus U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGGUCUCCAUCGGGGGCCAUGAUAUUAAACUGAUUUUUGGAAGGCGGCGGAGUGCUUGGAGCUUGCUCCACCUCUGCCAC hit 57 : 2 123 (fwd) 32.54 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 UCUGAUA+G: C CCAU+GG G :CA+GAUAUUAAA U AUUUUUG+A GG 37 UCUGAUACGGUCUCCAUCGGGGGCCAUGAUAUUAAACUGAUUUUUGGAAGG--------- 87 ----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>--- 120 AucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGCc 178 G: :::+ C UGG:G U U C:CCA C 88 -------------------------CGGCGGAGUgCUUGGAGCU----UGCUCCA----C 114 >>>>>>::::::: 179 ugGccCACCCCuc 191 ::: :C C 115 CUCUGCCAC---- 123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #16476,sp|AF110906.1|AF110906 Atrax sp. EBU-1999 U2 snRNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUAAAUAUCUGAUACGGUCCCUAUAUGGGCCCAGAAUAUUAAACUGAUUUUUGGAAACCGGGGGGAUGUCUGGGGCUUGCUCCGCUCCCUCCACGCGUUGGC hit 58 : 2 131 (fwd) 20.49 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG U AAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUAAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAaGAuAUUAAaUUuAUUUUUgAAggGgGggggggc 119 UCUGAUA+G: CCC:AU :GGG :CA AUAUUAAA U AUUUUUG+A 37 UCUGAUACGGUCCCUAUAUGGGCCCAGAAUAUUAAACUGAUUUUUGGAA----------- 85 ----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 120 Auca.guaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 C + ::+ ::GGG UUGC C CUCC:: C 86 -ACCg---------------------GGGGGAUGUCUGGGGCUUGCUCCGCUCCCUC-CA 122 >>>>>>::::::: 179 ugGccCACCCCuc 191 :: C 123 CGCGUUGGC---- 131 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23644,sp|AF185197.1|AF185197 Idanthyrsus pennatus U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCAUUGGGGGACAUCGAUAUUAAACUGAUUUUUGGCACUGGGAGAAGAUGCAGGAGCUUGCUCCGACUUCUCCAC hit 59 : 2 124 (fwd) 36.51 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CCCCAUUGGGG:ACA+ GAUAUUAAA U AUUUUUG+ 37 UCUGAUACGUCCCCCAUUGGGGGACAUcGAUAUUAAACUGAUUUUUGGCACU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + G:G:+G C GG:G U U C:CC G 89 --------------------------GGGAGAAGAuGCAGGAGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CU :C:C C 116 CU-UCUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23645,sp|AF185198.1|AF185198 Amphiglena terebro U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCAUUGNGUCACUACGAUAUUAAACUGAUUUUUAGAACUAGGAGGGGAUGCAGGAGCUUGCUCCGACCCCUCCACGGGUUGGCC hit 60 : 2 133 (fwd) 28.77 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GUG C CAUUG G CAC+A GAUAUUAAA U AUUUUU +A GG:GGGG 37 UCUGAUACGUGGCCCAUUGNGUCACUAcGAUAUUAAACUGAUUUUUAGAACUAGGAGGGG 96 <----<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUACucCagGGC 177 + CAG:AGCUUGCU:C CCCC:CCACGG GUUG 97 AUGCAGGAGCUUGCUCC-gACCCCUCCACGG-----------GUUG-------------- 130 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CC 131 G----CC------- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23646,sp|AF185199.1|AF185199 Galeolaria caespitosa U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAGGCUCAUCGAGUCUCUACGAUAUUAAACUGAUUUUUGGACUUAGGAGGGGUUUCUGGAGCUUGCUCCGAACCCUCCAC hit 61 : 2 124 (fwd) 37.64 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G:G C:CAU+G:G C:C+A GAUAUUAAA U AUUUUUG+A + 37 UCUGAUACGAGGCUCAUCGAGUCUCUAcGAUAUUAAACUGAUUUUUGGACUU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 A G:G: :+ :CUGG:G U U C:CC G: 89 --------------------------AGGAGGGGUuUCUGGAGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 : :C:C C 116 AC-CCUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23647,sp|AF185200.1|AF185200 Owenia fusiformis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUGUCCAUUGGACAUCUUCGAUAUUAAACUGAUUUUUGUACCUGGGCGAAGUGUAAGGGGCUUGCUCCACCUUUGCCAUGGGUUGGCC hit 62 : 2 133 (fwd) 37.83 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::::CCAUUGG::::C++ GAUAUUAAA U AUUUUUG A G 37 UCUGAUACGAUGUCCAUUGGACAUCUUcGAUAUUAAACUGAUUUUUGUACCUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-.- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG.C 177 +C :: :G+ : GG: UUGC U C:CC : G C 90 --G-----------------------GCGAAGUGUAAGGGGCUUGC--UCCACCUUUGcC 122 ->>>>>>::::::: 178 cugGccCACCCCuc 191 U: :: CC 123 AUGGGUUGGCC--- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23648,sp|AF185201.1|AF185201 Lamellibrachia satsuma U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUCCCCACUGGGGAACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGAAGAUGCAGGAGCUUGCUCCGACUUCUCCAC hit 63 : 2 124 (fwd) 36.37 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CCCCA UGGGG:AC++ GAUAUUAAA U AUUUUUG+A 37 UCUGAUACGUUCCCCACUGGGGAACUUcGAUAUUAAACUGAUUUUUGGAACU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + G:G:+G C GG:G U U C:CC G 89 --------------------------GGGAGAAGAuGCAGGAGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CU :C:C C 116 CU-UCUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23649,sp|AF185202.1|AF185202 Glycera sp. AMW196835 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGNACAUCGAUAUUAAACUGAUUUUUGGNCUUCGGCGAAGUGUCAGGAGCUUGCUCCGCCUUUGCCACGGGN hit 64 : 2 128 (fwd) 32.00 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU CCCCA UGGGG ACA+ GAUAUUAAA U AUUUUUG+ + 37 UCUGAUACGUACCCCACUGGGGNACAUcGAUAUUAAACUGAUUUUUGGNCUU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + + +G: +: :::G + UUG +C+ C::: 89 --C-----------------------GGCGAAGUGuCAGGAGCUUG---CUCCGCCUU-- 118 ->>>>>>::::::: 178 cugGccCACCCCuc 191 +:+ :C+ 119 UGCCACGGGN---- 128 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23650,sp|AF185203.1|AF185203 Dodecaceria sp. AMW23009 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUCCUCACUGAGGAUCUACGAUAUUAAACUGAUUUUUGGAACUGGGGGAAGAUGCAGGAGCUUGCUCCGACUUCCCCACGGGUUGGCC hit 65 : 2 133 (fwd) 36.00 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CC:CA UG:GG::C+A GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGAUCCUCACUGAGGAUCUAcGAUAUUAAACUGAUUUUUGGAACUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,..<<<<<<-<<<<<<______.____>>>>>> 119 cAucaguaGCUUGCuacugccccccCAC..GggUcgcCcuGgggUUGCA.CUACucCagG 175 + :: :: ::G:G UUGC C ACU:C:: 90 --------------------------GGggAAGAUG-CAGGAGCUUGCUcCGACUUCCCC 122 --->>>>>>::::::: 176 GCcugGccCACCCCuc 191 :: :: CC 123 --ACGGGUUGGCC--- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23651,sp|AF185204.1|AF185204 Cirratulus sp. AMW24391 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCAUUGGGGGACAACGAUAUUAAACUGAUUUUUGGAACUGGGGGAAGAUGCAGGAGCUUGCUCCGACUUCCCCACGGGUUGGCC hit 66 : 2 133 (fwd) 41.65 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CCCCAUUGGGG:ACAA GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGUCCCCCAUUGGGGGACAAcGAUAUUAAACUGAUUUUUGGAACUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,..<<<<<<-<<<<<<______.____>>>>>> 119 cAucaguaGCUUGCuacugccccccCAC..GggUcgcCcuGgggUUGCA.CUACucCagG 175 + :: :: ::G:G UUGC C ACU:C:: 90 --------------------------GGggAAGAUG-CAGGAGCUUGCUcCGACUUCCCC 122 --->>>>>>::::::: 176 GCcugGccCACCCCuc 191 :: :: CC 123 --ACGGGUUGGCC--- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23652,sp|AF185205.1|AF185205 Pectinaria sp. AMW24389 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCACUGGGUCACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACACAGGGGCUUGCUCCGGCUCUUCCAC hit 67 : 2 124 (fwd) 38.58 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GUG CCCA UGGG CAC++ GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGUGGCCCACUGGGUCACUUcGAUAUUAAACUGAUUUUUGGAACUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 + G ::+ C::G++ UUG ++C::G C 90 --G-----------------------GAGGAGACACAGGGGCUUG------CUCCGG--C 116 >>>>>>::::::: 179 ugGccCACCCCuc 191 :: C C 117 U-CUUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23653,sp|AF185206.1|AF185206 Amphitritinae sp. AMW24400 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCACCCCACGUGGGUGCUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACACAGGGGCUUGCUCCGGCUCCUCCGC hit 68 : 2 124 (fwd) 34.31 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CCC:A :GGG::C++ GAUAUUAAA U AUUUUUG+A 37 UCUGAUACGCACCCCACGUGGGUGCUUcGAUAUUAAACUGAUUUUUGGAACU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-..<<<<<<__________>>>>>>- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc..CcuGgggUUGCACUACucCagGG 176 + G:G:+G C::G++ UUG ++C::G 89 --------------------------GGGAGGAGAcaCAGGGGCUUG------CUCCGG- 115 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 CU :C:C C 116 -CU-CCUCCGC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23654,sp|AF185207.1|AF185207 Amphitritides harpa U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCACUGGGUCACUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGGAGACACAGGGGCUUGCUCCGGCUCUUCCAC hit 69 : 2 124 (fwd) 38.58 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GUG CCCA UGGG CAC++ GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGUGGCCCACUGGGUCACUUcGAUAUUAAACUGAUUUUUGGAACUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 + G ::+ C::G++ UUG ++C::G C 90 --G-----------------------GAGGAGACACAGGGGCUUG------CUCCGG--C 116 >>>>>>::::::: 179 ugGccCACCCCuc 191 :: C C 117 U-CUUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23655,sp|AF185208.1|AF185208 Pista australis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGUACUUCGAUAUUAAACUGAUUUUUGGACAUGGGAGUUGACUCAGGAGCUUGCUCCGGCUUCUCCACGGGUUGGCC hit 70 : 2 133 (fwd) 38.42 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CCCCA UGGGG:AC++ GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGUACCCCACUGGGGUACUUcGAUAUUAAACUGAUUUUUGGACAUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 :AG:U :CU: + G U:GC C:G : UU +C: C:G + 90 -----GGAGUUGACUCA---------GGAGCUUGCUCCGGC-UUC----UCCACGGG--U 128 >>>>>>::::::: 179 ugGccCACCCCuc 191 U:G C 129 UGGCC-------- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23656,sp|AF185209.1|AF185209 Fauveliopsis banyuls U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCAUUGGGUCACUUCGAUAUUAAACUGAUUUUUGGAAGGGGGAGAAGAUGCAGGAGCUUGCUCCGACUUCUCCAC hit 71 : 2 124 (fwd) 39.62 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GUG CCCAUUGGG CAC++ GAUAUUAAA U AUUUUUG+A GG 37 UCUGAUACGUGGCCCAUUGGGUCACUUcGAUAUUAAACUGAUUUUUGGAAGG-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + G:G:+G C GG:G U U C:CC G 89 --------------------------GGGAGAAGAuGCAGGAGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CU :C:C C 116 CU-UCUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23657,sp|AF185210.1|AF185210 Sternaspis sp. U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUUUCCCCCAUUGGGGGAUUUCGAUAUUAAACUGAUUUUUGGAACUGGGAGAAGAUGCUGGGGCUUGCUCCGACUUCUCCACGGGUUGGCC hit 72 : 2 133 (fwd) 35.16 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUAU U:CCCCAUUGGGG:A ++ GAUAUUAAA U AUUUUUG+A G :G 37 UCUGAUAUUUCCCCCAUUGGGGGAUUUcGAUAUUAAACUGAUUUUUGGAACUG----GGA 92 <----<<<<<__>>>>>-..>>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>- 119 cAucaguaGCUUGCuacu..gccccccCACGggUcgcCcuGgggUUGCACUACucCagGG 176 :A : C: + GG U:GC C:G:: UU +C::C:G 93 GAA---------------gaUGCU----GGGGCUUGCUCCGAC-UUC----UCCACGGG- 127 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 +U:G CC 128 -UUGG-CC------- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23658,sp|AF185211.1|AF185211 Malacoceros sp. AMW8671 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGAUGCUCAUCGAGUCUCUACGAUAUUAAACUGAUUUUUGGACUGAGGAGGGGUUUCUGGAGCUUGCUCCGAACCCUCCAC hit 73 : 2 124 (fwd) 34.51 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G: C:CAU+G:G :C+A GAUAUUAAA U AUUUUUG+A +G 37 UCUGAUACGAUGCUCAUCGAGUCUCUAcGAUAUUAAACUGAUUUUUGGACUG-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 A G:G: :+ :CUGG:G U U C:CC G: 89 --------------------------AGGAGGGGUuUCUGGAGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 : :C:C C 116 AC-CCUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23659,sp|AF185212.1|AF185212 Mesochaetopterus sp. AMW22402 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUCUCCAUAGGAGAACUACGAUAUUAAACUGAUUUUUGGACAUGGNCAGAGCGCUAGGGGCUUGCUCCGCCUCCGUCACGGGUCUGCC hit 74 : 2 133 (fwd) 39.55 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,.,,,<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAg.gGgGggggg 117 UCUGAUA+GU:C:CCAU GG:G:AC+A GAUAUUAAA U AUUUUUG+A +GG 37 UCUGAUACGUUCUCCAUAGGAGAACUAcGAUAUUAAACUGAUUUUUGGACaUGG------ 90 <<----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>-. 118 gcAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGG. 176 C:G: C C:::G++ UUGC C C++C::: 91 ---------------------------NCAGAGCGCUAGGGGCUUGCUCCGCCUCCGUCa 123 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 C G :C: CC 124 -CGGGUCUGCC---- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23660,sp|AF185213.1|AF185213 Paralepidonotus ampulliferus U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGCGGUGCAUGCACCGCUACGAUAUUAAACUGAUUUUUGGAACUAGGCGGUGGCUCUGGGNUUUACCUACCCACCGCCAC hit 75 : 2 123 (fwd) 33.57 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G:G:: CAU G ::C:C+A GAUAUUAAA U AUUUUUG+A 37 UCUGAUACGCGGUGCAU-GCACCGCUAcGAUAUUAAACUGAUUUUUGGAACUA------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + +GG:+:C ::G UU C:: 89 --------------------------GGCGGUGGCuCUGGGN-UU-------UACCUA-- 112 ->>>>>>::::::: 178 cugGccCACCCCuc 191 C:+:CC+ C C 113 CCCACCGCCAC--- 123 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23661,sp|AF185214.1|AF185214 Sigalion bandaensis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGUGGUGCAUGCACCACUUCGAUAUUAAACUGAUUUUUGGAACCAGGUGGUAGCUAAGGGGUUUACUCCUCUACCACCA hit 76 : 2 122 (fwd) 42.06 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUAUGUG:: CAU G ::CAC++ GAUAUUAAA U AUUUUUG+A 37 UCUGAUAUGUGGUGCAU-GCACCACUUcGAUAUUAAACUGAUUUUUGGAACCA------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 + :GG:::C:::GGGGUU UACUCC::: 89 --------------------------GGUGGUAGCUAAGGGGUU----UACUCCUCU--A 116 >>>>>>::::::: 179 ugGccCACCCCuc 191 :::CC: 117 CCACCA------- 122 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23662,sp|AF185215.1|AF185215 Glycera tridactyla U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUACCCCACUGGGGUACAUCGAUAUUAAACUGAUUUUUGGACUUCGGCGAAGUGUCAGGAGCUUGCUCCGCCUUUGCCACGGGUUGGCC hit 77 : 2 133 (fwd) 36.60 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CCCCA UGGGG:ACA+ GAUAUUAAA U AUUUUUG+A 37 UCUGAUACGUACCCCACUGGGGUACAUcGAUAUUAAACUGAUUUUUGGAC---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<_._________.>>>>>> 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGggg.UUGCACUAC.ucCagG 175 U+ +C :: :: : :GG+G UUGC U C CC: : 87 --UUCg---------------------GCGAAGUG-UCAGGAGcUUGC--UCCg-CCUUU 119 -.-->>>>>>::::::: 176 G.CcugGccCACCCCuc 191 G C :: :: CC 120 GcCACGGGUUGGCC--- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23663,sp|AF185216.1|AF185216 Nephtys australiensis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCUCCAUUGGGGGACUUCGAUAUUAAACUGAUUUUUGGAACUAGGCGAAGUGUCAGGAGCUUGCUCCGCCUUUGCCACGGGUUGGCC hit 78 : 2 133 (fwd) 34.25 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:C CCAUUGG G:AC++ GAUAUUAAA U AUUUUUG+A 37 UCUGAUACGUCCUCCAUUGGGGGACUUcGAUAUUAAACUGAUUUUUGGAA---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<_._________.>>>>>> 119 cAuca.guaGCUUGCuacugccccccCACGggUcgcCcuGggg.UUGCACUAC.ucCagG 175 ++A +C :: :: : :GG+G UUGC U C CC: : 87 --CUAg---------------------GCGAAGUG-UCAGGAGcUUGC--UCCg-CCUUU 119 -.-->>>>>>::::::: 176 G.CcugGccCACCCCuc 191 G C :: :: CC 120 GcCACGGGUUGGCC--- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23664,sp|AF185217.1|AF185217 Ceratonereis longiceratophora U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCANACUGCNNCACUAUGAUAUUAAACUGAUUUUUGGACAUAGGCGUUGUGUUCGGAGGCUUGCUCCAACCUUUGCCACGGGUUGGCC hit 79 : 2 135 (fwd) 25.23 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GUG A U CAC+A GAUAUUAAA U AUUUUUG+A 37 UCUGAUACGUGGCANACUGCNNCACUAuGAUAUUAAACUGAUUUUUGGAC---------- 86 <----.<<<<<__>>>>>->>>>>>>>,,....<<<<<<-<<<<<<__________>>>> 119 cAuca.guaGCUUGCuacugccccccCAC....GggUcgcCcuGgggUUGCACUACucCa 173 +A +C : :UC: :: G: UUGC C A :C 87 --AUAg---------------------GCguugUGUUCG-GA-GGC-UUGCUCCAACCU- 119 >>-.-->>>>>>::::::: 174 gGG.CcugGccCACCCCuc 191 ::G C :GG: : CC 120 UUGcCACGGGUUGGCC--- 135 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23665,sp|AF185218.1|AF185218 Eurythoe sp. AMW4444 U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGCCCCAUCGGGGUACUUCGAUAUUAAACUGAUUUUUGGAACUGGGCGAAGAGUCAGGAGCUUGCUCCGCCUUUGCCAC hit 80 : 2 124 (fwd) 34.39 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU CCCCAU+GGGG AC++ GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGUGCCCCAUCGGGGUACUUcGAUAUUAAACUGAUUUUUGGAACUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>--- 119 cAucaguaGCUUGCuacugccccccCACGggUcgcCcuGgggUUGCACUACucCagGGCc 178 +CG : ::+C GG:G U U C:CC G C 90 --G-----------------------GCGAAGAGUCA-GGAGCU----UGCUCC--G--C 115 >>>>>>::::::: 179 ugGccCACCCCuc 191 :: : C C 116 CUUUGCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23666,sp|AF185219.1|AF185219 Lumbrineris latreilli U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCACUGGGGGACAUCGAUAUUAAACUGAUUUUUGGACUUGGGAGAAGAUCCUGGGGCUUGCUCCGACUUCUCCACGGGUUGGCC hit 81 : 2 133 (fwd) 43.60 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<.<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGggg.gg 117 UCUGAUA+GU:CCCCA UGGGG:ACA+ GAUAUUAAA U AUUUUUG+A + G :: 37 UCUGAUACGUCCCCCACUGGGGGACAUcGAUAUUAAACUGAUUUUUGGACUUG----gGA 92 <<----<<<<<__>>>>>-.>>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>- 118 gcAucaguaGCUUGCuacu.gccccccCACGggUcgcCcuGgggUUGCACUACucCagGG 176 G:A :C:: + GG U:GC C:G:: UU +C::C:G 93 GAAG---------------aUCCU----GGGGCUUGCUCCGAC-UUC----UCCACGGG- 127 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 +U:G CC 128 -UUGG-CC------- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23667,sp|AF185220.1|AF185220 Marphysa macintoshi U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUCCCCCAUUGGGGGACAUCGAUAUUAAACUGAUUUUUGUGCCUGGGAGAAGAUGCUGGGGCUUGCUCCGACUUCUCCAC hit 82 : 2 124 (fwd) 37.36 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GU:CCCCAUUGGGG:ACA+ GAUAUUAAA U AUUUUUG +G + 37 UCUGAUACGUCCCCCAUUGGGGGACAUcGAUAUUAAACUGAUUUUUG-UGCCU------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + G:G:+G CUGGGG U U CUCC G 89 --------------------------GGGAGAAGAuGCUGGGGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CU :C:C C 116 CU-UCUCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23668,sp|AF185221.1|AF185221 Eunice australis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAGCUCCCCCAUUGGGGGACCUCGAUAUUAAACUGAUUUUUGAACCUGGGAGAAGAUGCUGGGGCUUGCUCCGACUUCUCCACGGGUUGGCC hit 83 : 2 133 (fwd) 28.68 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA U:CCCCAUUGGGG:A + GAUAUUAAA U AUUUUUGAA G :G 37 UCUGAUAGCUCCCCCAUUGGGGGACCUcGAUAUUAAACUGAUUUUUGAACCUG----GGA 92 <----<<<<<__>>>>>-..>>>>>>>>,,<<<<<<-<<<<<<__________>>>>>>- 119 cAucaguaGCUUGCuacu..gccccccCACGggUcgcCcuGgggUUGCACUACucCagGG 176 :A : C: + GG U:GC C:G:: UU +C::C:G 93 GAA---------------gaUGCU----GGGGCUUGCUCCGAC-UUC----UCCACGGG- 127 -->>>>>>::::::: 177 CcugGccCACCCCuc 191 +U:G CC 128 -UUGG-CC------- 133 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23669,sp|AF185222.1|AF185222 Euclymene trinalis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUGGCCCACUGGGUCACUUCGAUAUUAAACUGAUUUUUGGACAUGGGCGAGGUGUCAGGAGCUUGCUCCGCCCUUGCCACGGGU hit 84 : 2 128 (fwd) 37.33 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+GUG CCCA UGGG CAC++ GAUAUUAAA U AUUUUUG+A G 37 UCUGAUACGUGGCCCACUGGGUCACUUcGAUAUUAAACUGAUUUUUGGACAUG------- 89 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + +G::+: :::G + UUG +C+ C::: 90 --------------------------GGCGAGGUGuCAGGAGCUUG---CUCCGCCCU-- 118 ->>>>>>::::::: 178 cugGccCACCCCuc 191 +:+::C+ 119 UGCCACGGGU---- 128 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23670,sp|AF185223.1|AF185223 Mediomastus australiensis U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUAUGACCCCCAUCGGGGGUCUUUGAUAUUAAACUGAUUUUUGNACUUGGGGGAAGAUACAGGGGCUUGCUCCGACUUCCCCAC hit 85 : 2 124 (fwd) 41.43 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUAUG::CCCCAU+GGGG::C++ GAUAUUAAA U AUUUUUG A + 37 UCUGAUAUGACCCCCAUCGGGGGUCUUuGAUAUUAAACUGAUUUUUGNACUU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + GGG:+G :C GGGG U U CUCC G: 89 --------------------------GGGGGAAGAuACAGGGGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CU :CCC C 116 CU-UCCCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23671,sp|AF185224.1|AF185224 Notomastus torquatus U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGACCCCCAUUGGGGGUCUAUGAUAUUAAACUGAUUUUUGAACCUGGGGGAAGAUACAGGGGCUUGCUCCGACUUCCCCAC hit 86 : 2 124 (fwd) 42.16 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>>>>>>,,.,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<< 60 UCUGAUAUgugcccCAUuGgggcacAa.GAuAUUAAaUUuAUUUUUgAAggGgGgggggg 118 UCUGAUA+G::CCCCAUUGGGG::C+A GAUAUUAAA U AUUUUUGAA 37 UCUGAUACGACCCCCAUUGGGGGUCUAuGAUAUUAAACUGAUUUUUGAACCU-------- 88 <----<<<<<__>>>>>->>>>>>>>,,<<<<<<-.<<<<<<__________>>>>>>-- 119 cAucaguaGCUUGCuacugccccccCACGggUcgc.CcuGgggUUGCACUACucCagGGC 177 + GGG:+G :C GGGG U U CUCC G: 89 --------------------------GGGGGAAGAuACAGGGGCU----UGCUCC-GA-- 115 ->>>>>>::::::: 178 cugGccCACCCCuc 191 CU :CCC C 116 CU-UCCCCAC---- 124 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/inv01.dat.fasta.gz ----sequence: #23672,sp|AF185225.1|AF185225 Polyophthalmus pictus U2 small nuclear RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUCAAAGUGUAGUAUCUGUUCUUAUCAGCUUAAUAUCUGAUACGUUGUACAUUGUACAACUAUGAUAUUAAACUGAUUUUUGGAACUGGGAGAAGAUUCAGGGGCUUGCUCCGACUUCUCCAC hit 87 : 2 124 (fwd) 37.73 bits ::::::<<<-<<<<____>>>>->>>,,,,.,,,,,,,,,,,,,,,,<<<<<<_______ 1 AUACCUUCUCGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGUUUAAUA 59 A UCAA GUGUAGUAUCUGUUCUUAUCAG UUAAUA 2 A-------------------------UCAAaGUGUAGUAUCUGUUCUUAUCAGCUUAAUA 36 _>>>>>>,<<<<<<<___>>