params (warning: commas chnged to semicolons),CM file,fastaFile,sequence #,EMBL accession,is in RFAMSEQ,sequence description (warning: commas chnged to semicolons),is reversed?,hit #,start nuc,end nuc,score (bits),hit sequence,hit Id(s) in Rfam with same seq,hit ranges within the same EMBL id,new hitness (0=in Rfam; 1=overlaps hit in Rfam;2=entirely new),amount of overlap with Rfam,this hit in Rfam format
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,126,K03160.1,1,sp|K03160.1|AARRA Auricula auricula-judae 5S ribosomal RNA.,0,0,1,118,120.05,AUCCACGGCCAUAGGACUCUGAAAGCACUGCAUCCCGUCCGAUCUGCAAAGUUAACCAGAGUACCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,K03160.1/1-118,1-118,0,117,K03160.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,2066,AB030581.1,1,sp|AB030581.1|AB030581 Lentinula edodes DNA; intergenic nontranscribed sequence 1 (IGR1) and 5S rRNA; complete sequence.,0,1,1119,1237,111.72,AUCCACGGCCAUAGGACUCUGAAAGAACCGCAUCCCGUCUGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUAGUUU,AB030581.1/1119-1237,1119-1237,0,118,AB030581.1/1119-1237
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,2067,AB030582.1,1,sp|AB030582.1|AB030582 Lentinula edodes DNA; 5S rRNA and intergenic nontranscribed sequence 2 (IGR2); complete sequence.,0,2,1,119,106.91,AUCCACGGCCAUAGAACUCUGAAAGAACCGCAUCCCGUCUGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUAGUUU,AB030582.1/1-119,1-119,0,118,AB030582.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,2334,AB035082.1,1,sp|AB035082.1|AB035082 Aspergillus niger var. awamori ppas gene for protopectinase-AS; complete cds.,0,3,2954,3072,58.02,ACAUACGACCACAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACAGCAAAUCCCUUCUAUUAUAUAUC,AB035082.1/2954-3072,2954-3072,0,118,AB035082.1/2954-3072
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,4003,AB069683.1,1,sp|AB069683.1|AB069683 Grifola frondosa genes for 5S rRNA; intergenic spacer 2; 18S rRNA; partial and complete sequence.,0,4,1,119,106.41,AUCCACGGCCAUUGAACUCUGAAAGCACCGCAUCCCGUCUGAUCUGCGCAGUUAACCAAAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUUU,AB069683.1/1-119,1-119,0,118,AB069683.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,4533,AB076253.1,1,sp|AB076253.1|AB076253 Fusarium oxysporum Fopho5 gene; FoTri101 pseudogene; Foscs pseudogene; Foura7 gene; partial and complete cds.,1,5,5363,5244,100.73,ACAUACGACCAUACCUAUCAGAGAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCUGGUAAGGGGCGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCCGCUGUUGUAUGUU,AB076253.1/5363-5244,5363-5244,0,119,AB076253.1/5363-5244
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5515,AB093014.1,1,sp|AB093014.1|AB093014 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:NIS 001; sub_clone:clone-2.,0,6,436,519,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,436-519,0,83,AB093014.1/436-519
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5517,AB093016.2,1,sp|AB093016.2|AB093016 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:NIS 408; sub_clone:clone-2.,0,7,444,527,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,444-527,0,83,AB093016.2/444-527
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5518,AB093017.2,1,sp|AB093017.2|AB093017 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:NIS 408; sub_clone:clone-3.,0,8,442,525,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,442-525,0,83,AB093017.2/442-525
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5520,AB093019.2,1,sp|AB093019.2|AB093019 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:NIS 520; sub_clone:clone-3.,0,9,444,527,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,444-527,0,83,AB093019.2/444-527
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5521,AB093020.2,1,sp|AB093020.2|AB093020 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:NIS 611; sub_clone:clone-1.,0,10,442,525,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,442-525,0,83,AB093020.2/442-525
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5522,AB093021.2,1,sp|AB093021.2|AB093021 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:NIS 611; sub_clone:clone-3.,0,11,438,521,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,438-521,0,83,AB093021.2/438-521
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5523,AB093022.2,1,sp|AB093022.2|AB093022 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:Y9101; sub_clone:clone-1.,0,12,440,523,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,440-523,0,83,AB093022.2/440-523
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5526,AB093025.2,1,sp|AB093025.2|AB093025 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:CGS; sub_clone:clone-1.,0,13,443,526,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,443-526,0,83,AB093025.2/443-526
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,5528,AB093027.2,1,sp|AB093027.2|AB093027 Nosema bombycis genes for 16S rRNA; ITS; 5S rRNA; partial and complete sequence; strain:CGS; sub_clone:clone-3.,0,14,444,527,26.92,ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG,AB093019.2/444-527 AB093027.2/444-527 AB093025.2/443-526 AB093014.1/436-519 AB093016.2/444-527 AB093020.2/442-525 AB093021.2/438-521 AB093022.2/440-523 AB093017.2/442-525,444-527,0,83,AB093027.2/444-527
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,6325,AC087725.8,1,sp|AC087725.8|AC087725 Sequence of the Aflatoxin Biolsynthetic Custer region of Aspergillus flavus; complete sequence.,1,15,38701,38582,90.74,ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUCCUGUUGUAUGUU,AC087725.8/38701-38582,38701-38582,0,119,AC087725.8/38701-38582
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,6397,X00867.1,1,sp|X00867.1|AC5SRNA Acremonium chrysogenum 5S ribosomal RNA,0,16,1,119,107.65,ACAUACGACCAUACCUAGUGGAAAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCCGCUAAGGGGCUGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCUGUUGUAUGU,X00867.1/1-119,1-119,0,118,X00867.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,6524,K03161.1,1,sp|K03161.1|AERRA Agaricus edulis 5S ribosomal RNA (5S rRNA).,0,17,1,118,122.95,AUCCACGGCCAUAGGACUGUGAAAGCACCGCAUCCCGUCUGAUCUGCGCAGUUAAACACAGUGCCGCCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAUCCUGGGUGCUGUGGUU,K03161.1/1-118,1-118,0,117,K03161.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,12030,AF113137.1,1,sp|AF113137.1|AF113137 Eremothecium gossypii 5S ribosomal RNA; 18S ribosomal RNA genes; internal transcribed spacer 1; 5.8S ribosomal RNA gene; internal transcribed spacer 2; and 25S ribosomal RNA gene; complete sequence.,1,18,121,1,107.24,GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU,X01128.1/46-166 X00468.1/1218-1098 AF543841.1/4299-4179 J01360.1/540-660 X70227.1/53-173 M19949.1/1-121 Z73326.1/12101-12221 X00486.1/1265-1145 V01339.1/394-274 V01294.1/1-121 AF113137.1/121-1 U53879.1/30069-30189 X06838.1/181-61 U51921.1/20539-20659,121-1,0,120,AF113137.1/121-1
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,12223,AF116534.1,1,sp|AF116534.1|AF116534 Laccaria bicolor 25S ribosomal RNA gene; partial sequence; intergenic spacer 1; 5S ribosomal RNA gene; intergenic spacer 2; complete sequence; and 17S ribosomal RNA gene; partial sequence.,0,19,793,911,122.91,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUUU,AF116534.1/793-911,793-911,0,118,AF116534.1/793-911
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13943,AF152930.1,1,sp|AF152930.1|AF152930 Clavispora opuntiae strain UFMG91-1489 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,20,616,496,86.09,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCUGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152930.1/616-496,616-496,0,120,AF152930.1/616-496
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13944,AF152931.1,1,sp|AF152931.1|AF152931 Clavispora opuntiae strain UFMG91-1613 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,21,528,408,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,528-408,0,120,AF152931.1/528-408
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13945,AF152932.1,1,sp|AF152932.1|AF152932 Clavispora opuntiae strain SU(B)86-264 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,22,494,374,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,494-374,0,120,AF152932.1/494-374
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13946,AF152933.1,1,sp|AF152933.1|AF152933 Clavispora opuntiae strain SU(B)94-302.1 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,23,550,430,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,550-430,0,120,AF152933.1/550-430
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13947,AF152934.1,1,sp|AF152934.1|AF152934 Clavispora opuntiae strain UWO(PS)93-351.1 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,24,511,391,73.71,GGUUGCGGCUAUAUCAUGUGGAAAAUACUGUUUCCUGUCCGAUCAACGUUAGUCAAGCCAUUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152934.1/511-391,511-391,0,120,AF152934.1/511-391
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13948,AF152935.1,1,sp|AF152935.1|AF152935 Clavispora opuntiae strain UWO(PS)91-407.3 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,25,574,454,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,574-454,0,120,AF152935.1/574-454
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13949,AF152936.1,1,sp|AF152936.1|AF152936 Clavispora opuntiae strain UWO(PS)85-502.2 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,26,572,452,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,572-452,0,120,AF152936.1/572-452
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13950,AF152937.1,1,sp|AF152937.1|AF152937 Clavispora opuntiae strain UCD(FST)86-7.3 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,27,551,431,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,551-431,0,120,AF152937.1/551-431
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13951,AF152938.1,1,sp|AF152938.1|AF152938 Clavispora opuntiae strain UWO(PS)83-803.2 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,28,658,538,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,658-538,0,120,AF152938.1/658-538
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13952,AF152939.1,1,sp|AF152939.1|AF152939 Clavispora opuntiae strain SU(B)82-107 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,29,562,442,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,562-442,0,120,AF152939.1/562-442
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13953,AF152940.1,1,sp|AF152940.1|AF152940 Clavispora opuntiae strain UWO(PS)83-1030.1c 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,30,550,430,94.30,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152936.1/572-452 AF152940.1/550-430 AF152937.1/551-431 AF152931.1/528-408 AF152935.1/574-454 AF152932.1/494-374 AF152933.1/550-430 AF152938.1/658-538 AF152939.1/562-442,550-430,0,120,AF152940.1/550-430
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,13954,AF152941.1,1,sp|AF152941.1|AF152941 Clavispora opuntiae strain UWO(PS)83-1030.1 5S ribosomal RNA gene and external transcribed spacer; complete sequence.,1,31,557,437,87.18,GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGUGAGUAAUGCAGUUAGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU,AF152941.1/557-437,557-437,0,120,AF152941.1/557-437
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,15888,AF181821.1,1,sp|AF181821.1|AF181821 Neurospora crassa transposon Punt complete sequence and 5S ribosomal RNA pseudogene; partial sequence.,0,32,5,100,36.99,ACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUAAGGGCCAAACUAGACGUGCUAACCCCAACCCCGGUCA,AF181821.1/5-100,5-100,0,95,AF181821.1/5-100
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,16171,AF189366.2,1,sp|AF189366.2|AF189366 Blumeria graminis chitin synthase (chs2) gene; complete cds.,1,33,8348,8229,78.71,ACAUACGACCAUAGAUUGAGGAGAAUUGGGCAUCCCGUCCGCUCUGCCAUACACAAGCCUCAAAUCGGCAGUCUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUGCUGUUGUAUGUU,AF189366.2/8348-8229,8348-8229,0,119,AF189366.2/8348-8229
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,20811,AF267176.1,1,sp|AF267176.1|AF267176 Pyricularia grisea chromosome 7 clone BAC 6J18; genomic sequence.,0,34,18092,18211,104.38,ACAUACGACCAUACCCACUGGAAUAUACGGGACCCCGUCCGCUCUCCCCUAGUCAAACCAGUGAGGGCCGAACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCUCGGUGUUGUAUGUU,AF267176.1/18092-18211,18092-18211,0,119,AF267176.1/18092-18211
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,28200,AF356652.1,1,sp|AF356652.1|AF356652 Filobasidiella neoformans var. neoformans 5S ribosomal RNA; 17S ribosomal RNA genes; internal transcribed spacer 1; 5.8S ribosomal RNA gene; internal transcribed spacer 2; and 25S ribosomal RNA gene; complete sequence.,0,35,1419,1537,114.35,AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUUC,L27079.1/1268-1386 AF356652.1/1419-1537 L27078.1/1228-1346,1419-1537,0,118,AF356652.1/1419-1537
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,34825,AF448480.1,1,sp|AF448480.1|AF448480 Colletotrichum coccodes isolate DAOM 183088 SCAR marker; complete sequence.,1,36,183,64,101.07,ACAUGCGACCAUACCCACUGGAGAACUCGGGAUCCCGUCCGCUCUCCCAUCGAUAAACCAGUGAGGGCUGGAGUAGUAGUUGGGUCGGUGACGACCAGCGAAUGCCCGGUGUUGCAUGUC,AF448480.1/183-64,183-64,0,119,AF448480.1/183-64
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,36304,AF467695.1,1,sp|AF467695.1|AF467695 Pichia angusta 5S ribosomal RNA gene and 5S-25S intergenic spacer region; complete sequence; and 25S ribosomal RNA gene; partial sequence.,0,37,954,1074,106.74,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGCUAAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGCAAUCU,AF467695.1/954-1074,954-1074,0,120,AF467695.1/954-1074
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39674,AF543841.1,1,sp|AF543841.1|AF543841 Kluyveromyces marxianus 26S ribosomal RNA; 18S ribosomal RNA genes; internal transcribed spacer 1; 5.8S ribosomal RNA gene and internal transcribed spacer 2; complete sequence; and 26S ribosomal RNA gene; partial sequence.,1,38,4299,4179,107.24,GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU,X01128.1/46-166 X00468.1/1218-1098 AF543841.1/4299-4179 J01360.1/540-660 X70227.1/53-173 M19949.1/1-121 Z73326.1/12101-12221 X00486.1/1265-1145 V01339.1/394-274 V01294.1/1-121 AF113137.1/121-1 U53879.1/30069-30189 X06838.1/181-61 U51921.1/20539-20659,4299-4179,0,120,AF543841.1/4299-4179
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39787,X00690.1,1,sp|X00690.1|AFRN01 Aspergillus flavus 5S ribosomal RNA sequence,0,39,1,119,87.86,ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUCCUGUUGUAUGU,X00690.1/1-119,1-119,0,118,X00690.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39909,X00074.1,1,sp|X00074.1|AGHEYSV2 Coprinus radiatus 5S ribosomal RNA.,0,40,1,118,120.04,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,X00074.1/1-118,1-118,0,117,X00074.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39946,X99087.1,1,sp|X99087.1|AI5SRRNA A.immersus 5S rRNA gene; a-type,0,41,1755,1874,116.09,ACAUACGGCCAUAGAUUGAAGAAUAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUUCUAAUCGCCAAGUUAGUACUGCGGUGGGUGACCACGCGGGAAUCCUUGGUGCUGUAUGUU,X99087.1/1755-1874,1755-1874,0,119,X99087.1/1755-1874
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39947,X99088.1,1,sp|X99088.1|AI5SRRNA1 A.immersus 5S rRNA genes; b3 & b1 types,0,42,113,232,97.83,ACAUACGGCCAUAGAUUGAAGAGAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAACUUCUAAUCGCCAAGUUAGUACUGCGGUGGGUGACCACGCAGGAAUCCUUGGUGCUGUAUAUC,X99088.1/113-232,113-232 531-650,0,119,X99088.1/113-232
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39947,X99088.1,1,sp|X99088.1|AI5SRRNA1 A.immersus 5S rRNA genes; b3 & b1 types,0,43,531,650,108.32,ACAUACGGCCAUAGAUGGAAGAAUACACGGGAUCCCGUCUGCUCUCCCAUAGUUAACCUUUCAAUCGCCUAGCUAGUACUGCGGUGGGUGACCACGCAGGAAUCCUUGGUGCUGUAUGUU,X99088.1/531-650,113-232 531-650,0,119,X99088.1/531-650
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39948,X99089.1,1,sp|X99089.1|AI5SRRNA2 A.immersus 5S rRNA gene; b2-type,0,44,299,417,109.76,CAUACGGCCAUAGAUUGAAGAAUAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUUCUAAUCGCCUCGUUAGUACUGCGGUGGGUGACCACACGGGAAUCCGAGGUGCUGUAUGCU,X99089.1/299-417,299-417,0,118,X99089.1/299-417
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,39949,X99090.1,1,sp|X99090.1|AI5SRRNA3 A.immersus 5S rRNA gene; c-type,0,45,237,330,28.05,ACGGCCAUAGAUUGAAGAUCAGACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUUCAAAUCGCCUAGUUAGUACUGCGGUGGGUGACCACGCG,X99090.1/237-330,237-330,0,93,X99090.1/237-330
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40361,X00687.1,1,sp|X00687.1|ANRN04 Aspergillus nidulans 5S ribosomal RNA (1),0,46,1,119,90.97,ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCUACUGUUGUAUGU,X00687.1/1-119,1-119,0,118,X00687.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40362,X00688.1,1,sp|X00688.1|ANRN05 Aspergillus nidulans 5S ribosomal RNA (2),0,47,1,119,100.56,ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGU,X00688.1/1-119,1-119,0,118,X00688.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40363,X00689.1,1,sp|X00689.1|ANRN06 Aspergillus nidulans 5S ribosomal RNA (3),0,48,1,119,97.03,ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGU,X00689.1/1-119,1-119,0,118,X00689.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40364,X00691.1,1,sp|X00691.1|ANRN07 Aspergillus niger 5S ribosomal RNA sequence,0,49,1,119,84.94,ACAUACGACCACAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUUCUGUUGUAUGU,X00691.1/1-119,1-119,0,118,X00691.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40367,K03162.1,1,sp|K03162.1|ANRRA A.nidulans 5S ribosomal RNA.,0,50,1,119,97.40,GCAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACAUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGC,K03162.1/1-119,1-119,0,118,K03162.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40368,X03564.1,1,sp|X03564.1|ANRRN5G1 Aspergillus nidulans 5S rRNA type 1 gene (clone pKS 6-12),0,51,395,514,89.39,ACAUACGACCACAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCUACUGUUGUAUGUU,X03564.1/395-514,395-514,0,119,X03564.1/395-514
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40369,X03566.1,1,sp|X03566.1|ANRRN5G2 Aspergillus nidulans 5S rRNA type 2 gene (clone pMN 912),0,52,172,291,103.43,ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGUU,X03567.1/108-227 X03566.1/172-291,172-291,0,119,X03566.1/172-291
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40370,X03567.1,1,sp|X03567.1|ANRRN5G3 Aspergillus nidulans 5S rRNA type 2 gene (clone pMN 1412),0,53,108,227,103.43,ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGUU,X03567.1/108-227 X03566.1/172-291,108-227,0,119,X03567.1/108-227
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40371,X03568.1,1,sp|X03568.1|ANRRN5G4 Aspergillus nidulans 5S rRNA type 2 gene (clone pMN 24),0,54,68,187,98.83,ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAUCUGUUGUAUGUC,X03568.1/68-187,68-187,0,119,X03568.1/68-187
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40530,X00864.1,1,sp|X00864.1|AP5SRNA1 Acremonium persicinum 5S ribosomal RNA (1),0,55,1,119,86.95,ACAUACGACCAUAGCUCUCAGAGAACUCGGGAUCCCGUCUGCUCUCCUGUAGAUAAGCUGACAAGCGGCCGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCUGUUGUAUGU,X00864.1/1-119,1-119,0,118,X00864.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40531,X00865.1,1,sp|X00865.1|AP5SRNA2 Acremonium persicinum 5S ribosomal RNA (2),0,56,1,119,102.95,ACAUACGACCAUAGACGCUAGAAAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUGGCGAUCGGCGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCUGCUGUUGUAUGU,X00865.1/1-119,1-119,0,118,X00865.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40532,X00866.1,1,sp|X00866.1|AP5SRNA3 Acremonium persicinum 5S ribosomal RNA (3),0,57,1,119,102.28,ACAUACGACCAUAGGCGCUAGAAAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUGGCGACCGGCUGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCUGUUGUAUGU,X00866.1/1-119,1-119,0,118,X00866.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40714,X06849.1,1,sp|X06849.1|AS5SRNA Aessosporon salmonicolor 5S rRNA,0,58,1,119,96.62,AUCUGCGGCCAUACCGCGAUGAACCCUCCGCGUCUCGUCCGAUCCGCGCAGAUAAGCAUCGCAGGGGCCAGAGAGUAUUGACGUGGGUGACCAGUCGAGAACACUGUGCUGCCGCAGGU,X06849.1/1-119,1-119,0,118,X06849.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,40797,M35573.1,1,sp|M35573.1|ASRRA A.solani 5S rRNA.,0,59,1,119,115.28,AGGUGCGACCAUACCGUGUUGAAAAUUCUGCAUCCCGUCCGAUCUGCAAAGACAAGCAACACAGGGCCCAGUCAGUAGUGCGGUGGGUGACCACGUGCGAAUACUGUGGUGUUGCACUU,M35573.1/1-119,1-119,0,118,M35573.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,46298,AY198397.1,1,sp|AY198397.1|AY198397 Candida glabrata strain CBS 138 5S ribosomal RNA gene; complete sequence.,0,60,234,354,107.17,GGUUGCGGCCAUAUCCACAAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUUGUGAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU,AY198397.1/234-354 AY198399.1/812-932,234-354,0,120,AY198397.1/234-354
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,46300,AY198399.1,1,sp|AY198399.1|AY198399 Kluyveromyces delphensis strain CBS 2170 5S ribosomal RNA gene; complete sequence.,0,61,812,932,107.17,GGUUGCGGCCAUAUCCACAAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUUGUGAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU,AY198397.1/234-354 AY198399.1/812-932,812-932,0,120,AY198399.1/812-932
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,46558,AY211522.1,1,sp|AY211522.1|AY211522 Heterobasidion annosum microsatellite-motif-based amplification product CT1350.,0,62,463,581,124.32,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUUU,AY211522.1/463-581,463-581,0,118,AY211522.1/463-581
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,48009,AY259631.1,1,sp|AY259631.1|AY259631 Nosema bombycis large subunit ribosomal RNA gene; internal transcribed spacer; small subunit ribosomal RNA gene; intergenic spacer region; and 5S ribosomal RNA gene; complete sequence.,0,63,4331,4442,70.79,AUACGGUCAUAUCUACUGAAAACCACUGGAACCCACCAGAACUCCGAAGUUAAACCAGAUGAGCUUAAUCAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGUGCUGUA,AY259631.1/4331-4442,4331-4442,0,111,AY259631.1/4331-4442
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,49756,X06854.1,1,sp|X06854.1|BA5SRNA Bjerkandera adusta 5S rRNA,0,64,1,118,122.69,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU,X06854.1/1-118,1-118,0,117,X06854.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50110,M36313.1,1,sp|M36313.1|BMRRAA Basidiobolus magnus 5S ribosomal RNA.,0,65,2,120,131.88,AGCAUCGGCCAUACAUACCAGAAAAUACCGGAUCCCGUCCGAUCUCCGAAGUCAAACUGGUAAUGGCCUAGUCAGUACUACGGUGGGGGACCACGUGGGAAUACUAGGUGCUGAUGUUU,M36313.1/2-120,2-120,0,118,M36313.1/2-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50236,X01543.1,1,sp|X01543.1|BSRRN5S Blastocadiella simplex (water mold) 5S ribosomal RNA,0,66,1,118,109.93,AGCUACGGCCAUACACACCAGAAAGCUCCGCAUCCCGUCCGAUCUGCGAAGAUAAUCUGGUGCUGGCGCGGUCAGUACUGUCGUGGGAGACCAGAUGGGAAUACCGCGUGCUGUAGUU,X01543.1/1-118,1-118,0,117,X01543.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50286,M36311.1,1,sp|M36311.1|BTRRAA B.trispora 5S rRNA.,0,67,2,120,128.54,AGCUACGGCCAUAUAAUACCGAAAGCACCGGAUCCCGUCCGAUCUCCGCAGUUAAACGGUAUAUAGAUCAGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACUGGUUGCUGUAGUUU,M36311.1/2-120,2-120,0,118,M36311.1/2-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50317,D10525.1,1,sp|D10525.1|CA1691 Candida azyma 5S rRNA.,0,68,1,120,78.65,GCCUACGGUCAUAUCAAUGCGAAUAUACGAUUUCCCGUCUGAUCAAUCAUAGUCAAACGCGUUAGAGCCACAUUCAGUAUUACGGUGGGAGACCACGUGAGAACGGGUGGUACUGAAGGU,D10525.1/1-120,1-120,0,119,D10525.1/1-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50347,X00868.1,1,sp|X00868.1|CA5SRNA Candida albicans 5S ribosomal RNA,0,69,1,121,90.35,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCCCCGUUCGAUCAACCGUAGUUAAGCUGCUAAGAGCAAUACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUGUGCUGCAAUCU,X16634.1/937-1057 X00868.1/1-121,1-121,0,120,X00868.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50376,X16634.1,1,sp|X16634.1|CAARS5S Candida albicans DNA of an autonomously replicating sequence (ARS) and 5S rRNA,0,70,937,1057,90.35,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCCCCGUUCGAUCAACCGUAGUUAAGCUGCUAAGAGCAAUACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUGUGCUGCAAUCU,X16634.1/937-1057 X00868.1/1-121,937-1057,0,120,X16634.1/937-1057
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,50950,D10534.1,1,sp|D10534.1|CC14830 Candida cylindracea 5S rRNA.,0,71,1,121,92.48,AGCUACGGCCAUAUCUAGCAGUCAGCACCGUUUCCCGUCCGAUCAACAGUAGUGAAUCUGCUAAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGUAGUUU,D10534.1/1-121,1-121,0,120,D10534.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51106,K02344.1,1,sp|K02344.1|CCRN5S Coprinus cinereus (mushroom) 5S ribosomal RNA.,0,72,1,118,116.63,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCUCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,X06853.1/1-118 K02344.1/1-118,1-118,0,117,K02344.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51109,M35577.1,1,sp|M35577.1|CCRRA01 C.cornigerum 5S rRNA.,0,73,1,118,116.94,AUCCACGGCCAUAGGACUUCGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCGGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,M35577.1/1-118 M35578.1/1-118,1-118,0,117,M35577.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51169,D10527.1,1,sp|D10527.1|CD1848 Candida diversa 5S rRNA.,0,74,1,120,105.81,GGUUGCGGCCAUAUCUAGCGGAAAGCACCGUUUCCCGUCCGAUCAACUGCAGUUAAGCCGCUGAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGCAAUC,D10527.1/1-120,1-120,0,119,D10527.1/1-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51235,M36310.1,1,sp|M36310.1|CERRAA Cunninghamella elegans 5S ribosomal RNA.,0,75,2,120,115.65,AGUUACGGCCACAUCAUCGUGAAAAGACCAAAUCCCGUCCGAUCUUUGCAGUCAAACACGAUCGAGCUUCGUCAGUACUAUGGUGAGAGAUCACAUGGGAAUACGAAGUGCUGUAAUUU,M36310.1/2-120,2-120,0,118,M36310.1/2-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51623,D10531.1,1,sp|D10531.1|CH1457 Cryptococcus humicolus 5S rRNA.,0,76,1,118,115.19,AUCCACGGCCAUAGGACUCAGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCUAGCUGAGUACCGCCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAUCCUGGGUGUCGUGGUU,D10531.1/1-118,1-118,0,117,D10531.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51900,D10532.1,1,sp|D10532.1|CM1446 Candida magnoliae 5S rRNA.,0,77,1,120,82.83,AGCUGCGGCCAAACCCAGGUGAAUACAAGACUUCCCGUCCGAUCAGUCCUAUUUAAACACCUGAGGGCCUUACCAAGUAUUGUAGUGGGAGACCAUACGAGAACAGAAGGUGCUGCAGUU,D10532.1/1-120,1-120,0,119,D10532.1/1-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,51901,D10526.1,1,sp|D10526.1|CM1613 Candida melibiosica 5S rRNA.,0,78,1,121,100.38,GGUUGCGGCCAUACCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGGGCCACAGUGAGUAAUACAGUGGGAGACCAUGUGUGAAAUUGUGGUGCUGCAAUCU,D10526.1/1-121,1-121,0,120,D10526.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,52038,M36309.1,1,sp|M36309.1|CMRRAA C.mojavensis 5S rRNA.,0,79,1,120,118.63,AGCUGGGGCCAUAUGAACCUAUAAGUACCGCAUCCCGUCCCGAUCUGCGAAGUCAAGCAGGUUACAGCUCGGUUAGUACUAUGAUGGGAGACCACAUGGGAAUACCGGGUGUCCCAGCUU,M36309.1/1-120,1-120,0,119,M36309.1/1-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,52137,L14753.1,1,sp|L14753.1|CNRG5S Filobasidiella neoformans 5S ribosomal RNA (5S rRNA) gene; complete sequence.,0,80,1,118,112.80,AUCCACGGCCAUAGCCUUCAUAGAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAACAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUU,L14753.1/1-118,1-118,0,117,L14753.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,52138,L27078.1,1,sp|L27078.1|CNRGASGA Filobasidiella neoformans neoformans 5S ribosomal RNA and intergenic spacer.,0,81,1228,1346,114.35,AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUUC,L27079.1/1268-1386 AF356652.1/1419-1537 L27078.1/1228-1346,1228-1346,0,118,L27078.1/1228-1346
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,52139,L27079.1,1,sp|L27079.1|CNRGASGB Filobasidiella neoformans gattii 5S ribosomal RNA and intergenic spacer.,0,82,1268,1386,114.35,AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUUC,L27079.1/1268-1386 AF356652.1/1419-1537 L27078.1/1228-1346,1268-1386,0,118,L27079.1/1268-1386
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58703,AL590445.1,1,sp|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephalitozoon cuniculi (Microspora),0,83,176782,176900,117.63,AGUUGCGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCUGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCACUCGGGAAUACCGGGUGCUGCAACUU,AL590445.1/176782-176900,176782-176900,0,118,AL590445.1/176782-176900
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58705,AL590447.1,1,sp|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora),1,84,173041,172923,116.17,AGUUACGGCCAUAUCCACUGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCAGUGCGAGCCUGGAUAGUACUGAGAAGGGAGACCGCUCGGGAAUCCCAGGUGCUGUAACUU,AL590447.1/173041-172923,173041-172923,0,118,AL590447.1/173041-172923
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58709,AL590451.2,1,sp|AL590451.2|CNS07EGI chromosome IX of strain GB-M1 of Encephalitozoon cuniculi (Microspora),1,85,53797,53679,118.23,GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCCGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGUGCCGUAAUCU,AJ005582.1/157-275 AL590451.2/53797-53679,53797-53679,0,118,AL590451.2/53797-53679
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58712,AL627362.2,1,sp|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03; DP38F06 of chromosome 5 of Podospora anserina,0,86,2517,2636,102.35,ACAUACGACCAUAGACAGCUGAAAAUACGGCAUCCCGUCCGCUCUGCCCGAGUCAAACAGCUGAUCGCCAGACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCCUGGUGUUGUAUGUU,AL627362.2/2517-2636,2517-2636,0,119,AL627362.2/2517-2636
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58810,D10535.1,1,sp|D10535.1|CP1785 Candida parapsilosis 5S rRNA.,0,87,1,121,100.68,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACAGUAGUUAAGCUGCUAAGAGCGAGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCUCGUGCUGCAAUCU,D10535.1/1-121,1-121,0,120,D10535.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58900,M58383.1,1,sp|M58383.1|CPRRA1 Christiansenia pallida 5S ribosmal rRNA.,0,88,2,119,114.32,UCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGUGGU,M58383.1/2-119,2-119,0,117,M58383.1/2-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58981,D10533.1,1,sp|D10533.1|CR1593 Candida rugopelliculosa 5S rRNA.,0,89,1,120,105.21,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACUGCAGUUAAGCUGCUAAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGCAAUC,D10533.1/1-120,1-120,0,119,D10533.1/1-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,58982,D10528.1,1,sp|D10528.1|CR1619 Candida rugosa 5S rRNA.,0,90,1,121,104.36,GGUUGCGGCCAUACCUAGUAGAAAGCACCAUUUCCCGUCCGAUCAAUUGCAGUUAAGCUACUAAGGGUCUGAUUGAGUAGUGUAGUGGGAGACCAUACGCGAAAUUCAGAUGCUGCAAUCU,D10528.1/1-121,1-121,0,120,D10528.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59337,M36316.1,1,sp|M36316.1|CSRRAA C.sellatus 5S rRNA.,0,91,2,120,116.80,UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCCGAUCUUUGAAGUUAAGCUGGUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGUGCCGUAGGUC,M36316.1/2-120,2-120,0,118,M36316.1/2-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59477,X00573.1,1,sp|X00573.1|CTRRN5S Coleosporium tussilaginis 5S ribosomal RNA,0,92,1,118,121.75,AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU,X00573.1/1-118 K03169.1/1-118 K03166.1/1-118,1-118,0,117,X00573.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59501,K01050.1,1,sp|K01050.1|CUA Yeast (C.utilis) 5S ribosomal RNA.,0,93,1,121,102.26,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCUCCGUCCGAUCAACUGUAGUUAAGCUGCUAAGAGCCUGAUCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU,K01050.1/1-121 M10809.1/1-121,1-121,0,120,K01050.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59575,D10529.1,1,sp|D10529.1|CZ1627 Candida zeylanoides 5S rRNA.,0,94,1,121,100.68,GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGCUAAGAGCGAGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCUCGUGCUGCAAUCU,D10529.1/1-121,1-121,0,120,D10529.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59816,M36307.1,1,sp|M36307.1|DARRAA D.acuminosporus 5S rRNA.,0,95,1,119,115.36,AGUUACGACCAUAUCAACUUGAAAGCACCACACCCCGUCAGAUCUGUGAAGUUAAGCAAGUUAGAGCUUCGUUAGUAGUUUGGUGGGGGACCACAAGCGAAUACGAAGUGCCGUAGCUU,M36307.1/1-119,1-119,0,118,M36307.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,59867,X00073.1,1,sp|X00073.1|DDRRNA01 Dacrymyces deliquescens 5S ribosomal RNA,0,96,1,117,104.12,AUCCACGGCCAUAGGACACUGAAAGCACCGCAUCCCGUCCGAUCUGCGAGUUAACCAGUGUGCCGCCCGGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,X00073.1/1-117,1-117,0,116,X00073.1/1-117
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60140,M58382.1,1,sp|M58382.1|EARRA Efibulobasidium albescens 5S ribosomal RNA.,0,97,1,118,119.92,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,M58382.1/1-118,1-118,0,117,M58382.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60202,AJ005582.1,1,sp|AJ005582.1|ECU5582 Encephalitozoon cuniculi 5S rRNA gene; IGS and partial gene encoding guanylyl transferase,0,98,157,275,118.23,GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCCGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGUGCCGUAAUCU,AJ005582.1/157-275 AL590451.2/53797-53679,157-275,0,118,AJ005582.1/157-275
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60273,M58368.1,1,sp|M58368.1|EGRRA Exidia glandulosa 5S ribosomal RNA.,0,99,1,118,108.15,AUCCACGGCCAUAGGACUCUGAAAGCACUGCAGCCCGUCCGAUCUGCAAAGUUAACCAGAGUACCGCUCAGUUAGUACCAUGGUGGGGGACCAUGCGGGAAUCCUGGGUGCUGUGGUU,M58368.1/1-118,1-118,0,117,M58368.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60614,X00574.1,1,sp|X00574.1|ESRRN5S Endophyllum sempervivi 5S ribosomal RNA,0,100,1,118,122.26,AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU,X00574.1/1-118 X06850.1/1-118,1-118,0,117,X00574.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60681,X00069.1,1,sp|X00069.1|EVRRNA1 Exobasidium vaccini 5S rRNA,0,101,1,118,136.36,AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCACGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAGUU,X00069.1/1-118 M35575.1/1-118,1-118,0,117,X00069.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60718,X06851.1,1,sp|X06851.1|FC5SRNA Filobasidium capsuligenum 5S rRNA,0,102,1,118,122.77,AUCCACGGCCAUAGGACUCUGAAAACACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU,X06851.1/1-118,1-118,0,117,X06851.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60737,L79956.1,1,sp|L79956.1|FDLRR5S Filobasidiella depauperata 5S ribosomal RNA (5S rRNA).,0,103,3,119,86.43,CCUCGGCCAUAGCCUUUGCAUGAAAUACCACGUCCCGUCCGAUCCGUGAAGUCAAGUUGCAUAUCGCUCGGUUAGUACCAAGGUGGGGGACCACUUGGGAAUCCCGGGUGCCGAGGU,L79956.1/3-119,3-119,0,116,L79956.1/3-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,60765,X06850.1,1,sp|X06850.1|FF5SRNA Filobasidium floriforme 5S rRNA,0,104,1,118,122.26,AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU,X00574.1/1-118 X06850.1/1-118,1-118,0,117,X06850.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,61455,X73589.1,1,sp|X73589.1|GA5SRRNA G.applanatum 5S rRNA,0,105,1,118,119.90,AUCCACGGCCAUAGGACUCCGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAACCGGAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU,X73589.1/1-118,1-118,0,117,X73589.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,61527,K03166.1,1,sp|K03166.1|GCKRRA Gymnosporangium clavariaeforme 5S ribosomal RNA gene; complete sequence.,0,106,1,118,121.75,AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU,X00573.1/1-118 K03169.1/1-118 K03166.1/1-118,1-118,0,117,K03166.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,61788,M36315.1,1,sp|M36315.1|GHRRAA G.hibernus 5S rRNA.,0,107,3,121,120.11,UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCCGAUCUUUGAAGUUAAGCUGGUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGUGCCGUAAGUC,M36315.1/3-121,3-121,0,118,M36315.1/3-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,62060,M35575.1,1,sp|M35575.1|GPRRA G.phoenicis 5S rRNA.,0,108,1,118,136.36,AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCACGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAGUU,X00069.1/1-118 M35575.1/1-118,1-118,0,117,M35575.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,63432,M19949.1,1,sp|M19949.1|KLMRRA Kluyveromyces lactis 5S ribosomal RNA gene; complete sequence.,0,109,1,121,107.24,GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU,X01128.1/46-166 X00468.1/1218-1098 AF543841.1/4299-4179 J01360.1/540-660 X70227.1/53-173 M19949.1/1-121 Z73326.1/12101-12221 X00486.1/1265-1145 V01339.1/394-274 V01294.1/1-121 AF113137.1/121-1 U53879.1/30069-30189 X06838.1/181-61 U51921.1/20539-20659,1-121,0,120,M19949.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,63531,M58387.1,1,sp|M58387.1|KMRRA Kabatiella microsticta 5S ribosomal RNA.,0,110,1,120,70.56,ACACACGGCCACAGUCAGCUGAAAACUGGGCAUCCCGUCCGCUCUGCCAUACAUAAGCAGUUGAACGGCAGAUUAGUACCACGGUGGGUGACCACCUGGGAAUCCCUGCUGCAGAYUGUU,M58387.1/1-120,1-120,0,119,M58387.1/1-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,63842,M36308.1,1,sp|M36308.1|LMRRAA L.macrospora 5S rRNA.,0,111,1,119,123.84,AGUAACGGCCAUAUCAGCUUGAAAGCACCGCAACCCGUCAGAUCUGCGAAGUUAAGCAAGCUAGAGCUAGGUUAGUACUAUGGUGGGGGACCACAUGGGAAUACUUAGUGUCGUUAUUU,M36308.1/1-119,1-119,0,118,M36308.1/1-119
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,63871,M58384.1,1,sp|M58384.1|LPRRA Lycoperdon pyriforme 5S ribosomal RNA.,0,112,1,118,109.46,AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGAGGGGGACCACGCGGGAAUCUUGGGUGCUGUGGUU,M58384.1/1-118,1-118,0,117,M58384.1/1-118
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64259,M36312.1,1,sp|M36312.1|MFRRAA M.formosensis 5S rRNA.,0,113,2,120,116.87,AAUUACGGCCAUACACAGGAGAAAGCUCCGCAUCCCGUUCGAUCUGCGCAGAUAACCUCCUGAUGGCAGGGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACCCUGUGCUGUAAUUU,M36312.1/2-120,2-120,0,118,M36312.1/2-120
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64409,X00575.1,1,sp|X00575.1|MJRRN5S Microstroma juglandis 5S ribosomal RNA,0,114,1,121,99.47,AUCCACGGCCAUAGGACACAGAAAACAUCGCAUCCCGUCCGAUCUGCGCAAUCAAGCUGUGUACCGCCCAGUCAGUACCGGAGUGGGGGACCAUCCGGGAAUCCUGCCAGGUGCUGUGGUU,X00575.1/1-121,1-121,0,120,X00575.1/1-121
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64741,D14631.1,1,sp|D14631.1|NB5SRNA N.bombycis 5S ribosomal RNA; partial sequence.,0,115,2,112,76.09,AUACGGUUAUAUUUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGUGGUA,D14631.1/2-112,2-112,0,110,D14631.1/2-112
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64773,AL353817.1,1,sp|AL353817.1|NC1A9 Neurospora crassa DNA linkage group V Cosmid contig 1A9,0,116,39433,39553,28.49,ACAUACCAUAGUCACUGGGCCAAAACUCGGGAUCCCGUCCGCUCUCCCUUAGAUCAGCCUGUGACCGCCAGGCUAGUAGUCGGCUCGGUGAUGACCGGUGAACCACCUGGCUUUGUAUGUU,BX294014.1/29428-29548 AL353817.1/39433-39553 AL670006.1/82009-82129,39433-39553,0,120,AL353817.1/39433-39553
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64809,AL669985.1,1,sp|AL669985.1|NC43E3 Neurospora crassa DNA linkage group II Cosmid clone 43E3,0,117,11783,11902,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,11783-11902,0,119,AL669985.1/11783-11902
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64822,AL807371.1,1,sp|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3,0,118,40281,40403,73.99,ACAUACGACCAUAGGCACUAGAGAAAACUCGGGAUCCCGUCCGCUCUCCGAUCGAUAAGCCAGUGACCGCCAGGCCAGUAGUCGGCUCGGUGACGACCGGCGAAUCACCUGGUGUUGUAUGUU,AL807371.1/40281-40403,40281-40403,0,122,AL807371.1/40281-40403
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64831,BX294012.1,1,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10,0,119,64163,64282,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,107996-108115 81626-81745 64163-64282 156425-156544 90093-89974,0,119,BX294012.1/64163-64282
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64831,BX294012.1,1,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10,0,120,81626,81745,104.25,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCUAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294012.1/81626-81745 K02950.1/81-200,107996-108115 81626-81745 64163-64282 156425-156544 90093-89974,0,119,BX294012.1/81626-81745
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64831,BX294012.1,1,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10,0,121,107996,108115,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,107996-108115 81626-81745 64163-64282 156425-156544 90093-89974,0,119,BX294012.1/107996-108115
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64831,BX294012.1,1,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10,0,122,156425,156544,104.77,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUG,BX294012.1/156425-156544,107996-108115 81626-81745 64163-64282 156425-156544 90093-89974,0,119,BX294012.1/156425-156544
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64831,BX294012.1,1,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10,1,123,90093,89974,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,107996-108115 81626-81745 64163-64282 156425-156544 90093-89974,0,119,BX294012.1/90093-89974
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64872,AL451109.1,1,sp|AL451109.1|NCB11A5 Neurospora crassa DNA linkage group V BAC clone B11A5,0,124,4158,4277,111.17,ACAUACGGCCAUAGAUAGUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCACUAAUCGCCUGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCAGGUGCUGUAUGUU,BX294026.1/4950-4831 AL451109.1/4158-4277,4158-4277,0,119,AL451109.1/4158-4277
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64873,AL356834.1,1,sp|AL356834.1|NCB11B22 Neurospora crassa DNA linkage group II BAC clone B11B22,1,125,49658,49539,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,49658-49539,0,119,AL356834.1/49658-49539
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64874,AL669991.1,1,sp|AL669991.1|NCB11B23 Neurospora crassa DNA linkage group II BAC clone B11B23,1,126,19922,19803,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,14845-14726 11043-10924 19922-19803,0,119,AL669991.1/19922-19803
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64874,AL669991.1,1,sp|AL669991.1|NCB11B23 Neurospora crassa DNA linkage group II BAC clone B11B23,1,127,14845,14726,109.95,AUAUACGGCCAUAGAUAGUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCACUAAUCGCCUGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCAGGUGCUGUAUAUU,AL669991.1/14845-14726 AL669992.1/54146-54027,14845-14726 11043-10924 19922-19803,0,119,AL669991.1/14845-14726
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64874,AL669991.1,1,sp|AL669991.1|NCB11B23 Neurospora crassa DNA linkage group II BAC clone B11B23,1,128,11043,10924,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,14845-14726 11043-10924 19922-19803,0,119,AL669991.1/11043-10924
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64878,BX294092.1,1,sp|BX294092.1|NCB11H7 Neurospora crassa DNA linkage group V BAC clone B11H7,0,129,35199,35318,104.83,ACAUACGACCACAGAUGGUAGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCUACCAAUCGCCUGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCAGGUGUUGUAUGUU,BX294092.1/35199-35318 K02476.1/55-174 BX294092.1/67673-67554,35199-35318 67673-67554,0,119,BX294092.1/35199-35318
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64878,BX294092.1,1,sp|BX294092.1|NCB11H7 Neurospora crassa DNA linkage group V BAC clone B11H7,1,130,67673,67554,104.83,ACAUACGACCACAGAUGGUAGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCUACCAAUCGCCUGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCAGGUGUUGUAUGUU,BX294092.1/35199-35318 K02476.1/55-174 BX294092.1/67673-67554,35199-35318 67673-67554,0,119,BX294092.1/67673-67554
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64880,BX294014.1,1,sp|BX294014.1|NCB11O8 Neurospora crassa DNA linkage group V BAC contig B11O8,0,131,29428,29548,28.49,ACAUACCAUAGUCACUGGGCCAAAACUCGGGAUCCCGUCCGCUCUCCCUUAGAUCAGCCUGUGACCGCCAGGCUAGUAGUCGGCUCGGUGAUGACCGGUGAACCACCUGGCUUUGUAUGUU,BX294014.1/29428-29548 AL353817.1/39433-39553 AL670006.1/82009-82129,29428-29548,0,120,BX294014.1/29428-29548
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64881,AL513409.1,1,sp|AL513409.1|NCB11O9 Neurospora crassa DNA linkage group II BAC clone B11O9,1,132,64404,64285,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,64404-64285 15489-15370,0,119,AL513409.1/64404-64285
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64881,AL513409.1,1,sp|AL513409.1|NCB11O9 Neurospora crassa DNA linkage group II BAC clone B11O9,1,133,15489,15370,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,64404-64285 15489-15370,0,119,AL513409.1/15489-15370
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64882,AL390091.1,1,sp|AL390091.1|NCB12F1 Neurospora crassa DNA linkage group II BAC clone B12F1,1,134,7581,7462,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,7581-7462,0,119,AL390091.1/7581-7462
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64886,BX284762.1,1,sp|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BAC contig B13B3,0,135,54466,54585,111.00,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCUGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCAGGUGUUGUAUGUU,K02947.1/74-193 BX284762.1/54466-54585 K02948.1/73-192,54466-54585,0,119,BX284762.1/54466-54585
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64891,BX294091.1,1,sp|BX294091.1|NCB14A21 Neurospora crassa DNA linkage group V BAC contig B14A21,0,136,105877,105996,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,105877-105996,0,119,BX294091.1/105877-105996
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64893,AL356173.2,1,sp|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6,0,137,1028,1147,107.79,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUC,AL669993.1/36754-36873 AL356173.2/1028-1147 BX284747.1/55932-55813,19377-19258 1028-1147 24291-24410,0,119,AL356173.2/1028-1147
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64893,AL356173.2,1,sp|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6,0,138,24291,24410,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,19377-19258 1028-1147 24291-24410,0,119,AL356173.2/24291-24410
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64893,AL356173.2,1,sp|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6,1,139,19377,19258,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,19377-19258 1028-1147 24291-24410,0,119,AL356173.2/19377-19258
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64899,BX284750.1,1,sp|BX284750.1|NCB17B1 Neurospora crassa DNA linkage group II BAC clone B17B1,1,140,18355,18236,107.54,ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU,BX294091.1/105877-105996 AL669989.1/6476-6595 AL390354.1/80555-80436 K02949.1/84-203 AL669990.1/50087-50206 AL356173.2/19377-19258 AL356834.1/49658-49539 AL669989.1/27859-27740 AL669993.1/60017-60136 AL390091.1/7581-7462 BX294012.1/107996-108115 AL513409.1/64404-64285 BX294012.1/64163-64282 AL390354.1/21721-21602 AL669988.1/115925-116044 K02951.1/65-184 AL513409.1/15489-15370 AL669992.1/59223-59104 AL669991.1/11043-10924 AL669992.1/50344-50225 AL356173.2/24291-24410 BX284750.1/18355-18236 AL669991.1/19922-19803 AL669985.1/11783-11902 AL669993.1/55103-54984 K02469.1/191-310 AL669993.1/17378-17497 K02952.1/134-253 BX294012.1/90093-89974,18355-18236,0,119,BX284750.1/18355-18236
./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;47;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left;43;44;86;87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub;40;60 ,Rfam/cm/RF00001.cm (global),/projects/bio/zasha/seqs/embl/fun.dat.fasta.gz,64904,AL669992.1,1,sp|AL669992