Params: ./cmzasha --no-stderr --filter 130 25 Rfam/cm/RF00001.cm @/projects/bio/zasha/seqs/embl_release76/full-embl.list 1 hmm data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left,47,87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/remember-left,43,44,86,87 2struct-str data/TryAllCm_5.0/RF00001_forwardinf_hmmtype1_Ecoli_0MM.bin 1/sub,40,60 Build: release Host: bicycle.cs.washington.edu pid: 3433 ----hmm-from-cmFileName: Rfam/cm/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----hmm-from-cmFileName: Rfam/cm/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-left,47/remember-left,87 ----hmm-from-cmFileName: Rfam/cm/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/remember-left,43/remember-left,44/remember-left,86/remember-left,87 ----hmm-from-cmFileName: Rfam/cm/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ;Params: ./cmzasha --no-stderr --set-input-mm-file data/Ecoli_0mm.mm --cm2hmm-set-node-combiner-forward-inf Rfam/cm/RF00001.cm 1 1 100000 1 Build: release Host: gattaca.cs.washington.edu ----2struct-info: 1/sub,40,60 ----cmFile: Rfam/cm/RF00001.cm (global) ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #126,sp|K03160.1|AARRA Auricula auricula-judae 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACUGCAUCCCGUCCGAUCUGCAAAGUUAACCAGAGUACCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 0 : 1 118 (fwd) 120.05 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CAC:::AUCCC+UCC GA+CU:::AAG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACUGCAUCCCGUCC-GAUCUGCAAAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+A:CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 60 AGUACCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #2066,sp|AB030581.1|AB030581 Lentinula edodes DNA, intergenic nontranscribed sequence 1 (IGR1) and 5S rRNA, complete sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGAACCGCAUCCCGUCUGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUAGUUU hit 1 : 1119 1237 (fwd) 111.72 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : : :CGGCCAUAG:+::::G+AA::ACC::AUCCC+UC GA+CU::G+A::UAA C:: 1119 AUCCACGGCCAUAGGACUCUGAAAGAACCGCAUCCCGUCU-GAUCUGCGCAGUUAACCAG 1177 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG: : : 1178 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUAGUU 1236 : 121 c 121 + 1237 U 1237 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #2067,sp|AB030582.1|AB030582 Lentinula edodes DNA, 5S rRNA and intergenic nontranscribed sequence 2 (IGR2), complete sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGAACUCUGAAAGAACCGCAUCCCGUCUGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUAGUUU hit 2 : 1 119 (fwd) 106.91 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : : :CGGCCAUAG +::::G+AA::ACC::AUCCC+UC GA+CU::G+A::UAA C:: 1 AUCCACGGCCAUAGAACUCUGAAAGAACCGCAUCCCGUCU-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG: : : 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUAGUU 118 : 121 c 121 + 119 U 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #2334,sp|AB035082.1|AB035082 Aspergillus niger var. awamori ppas gene for protopectinase-AS, complete cds. ----isReversed: 0 ----hitSequence: ACAUACGACCACAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACAGCAAAUCCCUUCUAUUAUAUAUC hit 3 : 2954 3072 (fwd) 58.02 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 : ::: G::CA AG:G:G:GG+AAA A ::::CCC+UCC G:+C::: A UUAAGCC 2954 ACAUACGACCACAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 3012 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG ::+UAGUA : +GGUGGGUGACCAC G: AAU :: U ::U ::: 3013 ACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCAC-AGCAAAUCCCUUCU-AUUAUAUA 3070 ): 120 gc 121 :C 3071 UC 3072 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #4003,sp|AB069683.1|AB069683 Grifola frondosa genes for 5S rRNA, intergenic spacer 2, 18S rRNA, partial and complete sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUUGAACUCUGAAAGCACCGCAUCCCGUCUGAUCUGCGCAGUUAACCAAAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUUU hit 4 : 1 119 (fwd) 106.41 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAU G +:: :G+AA:CACC::AUCCC+UC GA+CU::G+AG:UAA C: 1 AUCCACGGCCAUUGAACUCUGAAAGCACCGCAUCCCGUCU-GAUCUGCGCAGUUAACCAA 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 + 119 U 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #4533,sp|AB076253.1|AB076253 Fusarium oxysporum Fopho5 gene, FoTri101 pseudogene, Foscs pseudogene, Foura7 gene, partial and complete cds. ----isReversed: 1 ----hitSequence: ACAUACGACCAUACCUAUCAGAGAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCUGGUAAGGGGCGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCCGCUGUUGUAUGUU hit 5 : 5363 5244 (rev) 100.73 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUA:C A ::G+ A C C :GA:CCC+UCC G:+CUC: A AG UAAGC: 3494 ACAUACGACCAUACCUAUCAGAGAACUCGGGAUCCCGUCC-GCUCUCCCAuAGAUAAGCU 3552 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 : U AG:G CG::+UAGUA+: +GGU:GGUGAC:AC+ G:+AAU :: G U G:UG:::G 3553 GGUAAGGGGCGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCCGCU-GUUGUAUG 3611 ): 120 gc 121 :+ 3612 UU 3613 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5515,sp|AB093014.1|AB093014 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:NIS 001, sub_clone:clone-2. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 6 : 436 519 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 436 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 490 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 491 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 519 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5517,sp|AB093016.2|AB093016 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:NIS 408, sub_clone:clone-2. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 7 : 444 527 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 444 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 498 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 499 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 527 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5518,sp|AB093017.2|AB093017 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:NIS 408, sub_clone:clone-3. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 8 : 442 525 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 442 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 496 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 497 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 525 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5520,sp|AB093019.2|AB093019 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:NIS 520, sub_clone:clone-3. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 9 : 444 527 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 444 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 498 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 499 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 527 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5521,sp|AB093020.2|AB093020 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:NIS 611, sub_clone:clone-1. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 10 : 442 525 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 442 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 496 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 497 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 525 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5522,sp|AB093021.2|AB093021 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:NIS 611, sub_clone:clone-3. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 11 : 438 521 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 438 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 492 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 493 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 521 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5523,sp|AB093022.2|AB093022 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:Y9101, sub_clone:clone-1. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 12 : 440 523 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 440 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 494 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 495 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 523 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5526,sp|AB093025.2|AB093025 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:CGS, sub_clone:clone-1. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 13 : 443 526 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 443 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 497 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 498 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 526 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #5528,sp|AB093027.2|AB093027 Nosema bombycis genes for 16S rRNA, ITS, 5S rRNA, partial and complete sequence, strain:CGS, sub_clone:clone-3. ----isReversed: 0 ----hitSequence: ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUCUAAGAAGGGAG hit 14 : 444 527 (fwd) 26.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +CGGCCAUA:C A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 444 ----ACGGCCAUAUCUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 498 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G::C: :+ UA G ++ AA : :G: G 499 GUAUGAGCUUAAU---UA--GU---CU-------------AA-GAAGGGA-G-------- 527 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #6325,sp|AC087725.8|AC087725 Sequence of the Aflatoxin Biolsynthetic Custer region of Aspergillus flavus, complete sequence. ----isReversed: 1 ----hitSequence: ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUCCUGUUGUAUGUU hit 15 : 38701 38582 (rev) 90.74 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+ AA A ::::CCC+UCC G:+C::: A UUAAGCC 2661 ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 2719 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG : ::+UAGUA+: +GGUGGGUGACCAC+ G:+AAU :: : U G:UG:::G 2720 ACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUCCU-GUUGUAUG 2778 ): 120 gc 121 :+ 2779 UU 2780 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #6397,sp|X00867.1|AC5SRNA Acremonium chrysogenum 5S ribosomal RNA ----isReversed: 0 ----hitSequence: ACAUACGACCAUACCUAGUGGAAAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCCGCUAAGGGGCUGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCUGUUGUAUGU hit 16 : 1 119 (fwd) 107.65 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUA:C AG GG+AAA:AC :GA:CCC+UCC G:+CUC: A A:U AAGCC 1 ACAUACGACCAUACCUAGUGGAAAAUACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 CU AG:G C ::+UAGUA+: +GGU:GGUGAC:AC+ G:+AAUA:: G U G:UG:::G 60 GCUAAGGGGCUGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #6524,sp|K03161.1|AERRA Agaricus edulis 5S ribosomal RNA (5S rRNA). ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUGUGAAAGCACCGCAUCCCGUCUGAUCUGCGCAGUUAAACACAGUGCCGCCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAUCCUGGGUGCUGUGGUU hit 17 : 1 118 (fwd) 122.95 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::G:G+AA:CACC::AUCCC+UC GA+CU::G+AG:UAA+C:C 1 AUCCACGGCCAUAGGACUGUGAAAGCACCGCAUCCCGUCU-GAUCUGCGCAGUUAAACAC 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: GGUGGG GACCAC UG:GAAU :U GGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #12030,sp|AF113137.1|AF113137 Eremothecium gossypii 5S ribosomal RNA, 18S ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 25S ribosomal RNA gene, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 18 : 121 1 (rev) 107.24 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C A:::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 8077 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 8135 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 ::U AG:GCC :: AGUA+:G GUGGGUGACCA +G:+AA ::AGGU GCUGC:A 8136 GGUAAGAGCCUGACcGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGU-GCUGCAA 8194 )): 119 ggc 121 +:+ 8195 UCU 8197 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #12223,sp|AF116534.1|AF116534 Laccaria bicolor 25S ribosomal RNA gene, partial sequence; intergenic spacer 1, 5S ribosomal RNA gene, intergenic spacer 2, complete sequence; and 17S ribosomal RNA gene, partial sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUUU hit 19 : 793 911 (fwd) 122.91 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 793 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 851 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 852 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 910 : 121 c 121 + 911 U 911 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13943,sp|AF152930.1|AF152930 Clavispora opuntiae strain UFMG91-1489 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCUGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 20 : 616 496 (rev) 86.09 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCC +UCC GA+C:::: A:U AAGCC 1569 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCUGUCC-GAUCAACGUuAGUCAAGCC 1627 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1628 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1686 )): 119 ggc 121 +:+ 1687 UCU 1689 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13944,sp|AF152931.1|AF152931 Clavispora opuntiae strain UFMG91-1613 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 21 : 528 408 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1545 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1603 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1604 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1662 )): 119 ggc 121 +:+ 1663 UCU 1665 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13945,sp|AF152932.1|AF152932 Clavispora opuntiae strain SU(B)86-264 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 22 : 494 374 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1620 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1678 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1679 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1737 )): 119 ggc 121 +:+ 1738 UCU 1740 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13946,sp|AF152933.1|AF152933 Clavispora opuntiae strain SU(B)94-302.1 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 23 : 550 430 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1637 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1695 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1696 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1754 )): 119 ggc 121 +:+ 1755 UCU 1757 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13947,sp|AF152934.1|AF152934 Clavispora opuntiae strain UWO(PS)93-351.1 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCUAUAUCAUGUGGAAAAUACUGUUUCCUGUCCGAUCAACGUUAGUCAAGCCAUUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 24 : 511 391 (rev) 73.71 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGC AUA:C+ :GG+AAA:AC::::UCC +UCC GA+C:::: A:U AAGCC 1557 GGUUGCGGCUAUAUCAUGUGGAAAAUACUGUUUCCUGUCC-GAUCAACGUuAGUCAAGCC 1615 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 : +AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1616 AUUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1674 )): 119 ggc 121 +:+ 1675 UCU 1677 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13948,sp|AF152935.1|AF152935 Clavispora opuntiae strain UWO(PS)91-407.3 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 25 : 574 454 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1588 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1646 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1647 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1705 )): 119 ggc 121 +:+ 1706 UCU 1708 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13949,sp|AF152936.1|AF152936 Clavispora opuntiae strain UWO(PS)85-502.2 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 26 : 572 452 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1571 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1629 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1630 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1688 )): 119 ggc 121 +:+ 1689 UCU 1691 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13950,sp|AF152937.1|AF152937 Clavispora opuntiae strain UCD(FST)86-7.3 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 27 : 551 431 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1625 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1683 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1684 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1742 )): 119 ggc 121 +:+ 1743 UCU 1745 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13951,sp|AF152938.1|AF152938 Clavispora opuntiae strain UWO(PS)83-803.2 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 28 : 658 538 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1577 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1635 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1636 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1694 )): 119 ggc 121 +:+ 1695 UCU 1697 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13952,sp|AF152939.1|AF152939 Clavispora opuntiae strain SU(B)82-107 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 29 : 562 442 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1593 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1651 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1652 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1710 )): 119 ggc 121 +:+ 1711 UCU 1713 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13953,sp|AF152940.1|AF152940 Clavispora opuntiae strain UWO(PS)83-1030.1c 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGCGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 30 : 550 430 (rev) 94.30 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1571 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1629 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU:GG GAC:A G+G+:AA :: GGU GCUGC:A 1630 ACUUAGAGCCACAGcGAGUAAUGCAGUUGGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1688 )): 119 ggc 121 +:+ 1689 UCU 1691 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #13954,sp|AF152941.1|AF152941 Clavispora opuntiae strain UWO(PS)83-1030.1 5S ribosomal RNA gene and external transcribed spacer, complete sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGAGCCACAGUGAGUAAUGCAGUUAGAGACAAUGCGUGAAAUUGUGGUGCUGCAAUCU hit 31 : 557 437 (rev) 87.18 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1601 GGUUGCGGCCAUAUCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 1659 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+GC GU::G GA::A G+G+:AA :: GGU GCUGC:A 1660 ACUUAGAGCCACAGuGAGUAAUGCAGUUAGAGACAAUGCGUGAAAUUGUGGU-GCUGCAA 1718 )): 119 ggc 121 +:+ 1719 UCU 1721 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #15888,sp|AF181821.1|AF181821 Neurospora crassa transposon Punt complete sequence and 5S ribosomal RNA pseudogene, partial sequence. ----isReversed: 0 ----hitSequence: ACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUAAGGGCCAAACUAGACGUGCUAACCCCAACCCCGGUCA hit 32 : 5 100 (fwd) 36.99 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 +CG+:CAUA:C A::GG+AA C C :GA:CCC+UCC G:+CUC: A AG UAAGCC 5 ----ACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCC-GCUCUCCCAuAGAUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 ::U AG:GCC : UA G GUG U A C+C+ AA : GGUC: 60 AGUAAGGGCCAAAC---UA--GACGUGC-UAA-CCCC----AA-CCCCGGUCA------- 100 ): 120 gc 121 - -- - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #16171,sp|AF189366.2|AF189366 Blumeria graminis chitin synthase (chs2) gene, complete cds. ----isReversed: 1 ----hitSequence: ACAUACGACCAUAGAUUGAGGAGAAUUGGGCAUCCCGUCCGCUCUGCCAUACACAAGCCUCAAAUCGGCAGUCUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUGCUGUUGUAUGUU hit 33 : 8348 8229 (rev) 78.71 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG: :G:GG+ A ::A:CCC+UCC G:+CU:: A A AAGCC 1553 ACAUACGACCAUAGAUUGAGGAGAAUUGGGCAUCCCGUCC-GCUCUGCCAuACACAAGCC 1611 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C: A:CG C : UAGUA+: +GGUGGGUGACCAC+ G:+AAU : G U G:UG:::G 1612 UCAAAUCGGCAGUCUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUGCU-GUUGUAUG 1670 ): 120 gc 121 :+ 1671 UU 1672 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #20811,sp|AF267176.1|AF267176 Pyricularia grisea chromosome 7 clone BAC 6J18, genomic sequence. ----isReversed: 0 ----hitSequence: ACAUACGACCAUACCCACUGGAAUAUACGGGACCCCGUCCGCUCUCCCCUAGUCAAACCAGUGAGGGCCGAACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCUCGGUGUUGUAUGUU hit 34 : 18092 18211 (fwd) 104.38 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUA:C A::GG+A A:AC :GA CCC+UCC G +CUC: + A:U AA+CC 18092 ACAUACGACCAUACCCACUGGAAUAUACGGGACCCCGUCC-GCUCUCCCCuAGUCAAACC 18150 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 ::U AG:GCCGA: UAGUACU GGUGGGUGACCAC GGGAAU :U GGU G:UG:::G 18151 AGUGAGGGCCGAACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCUCGGU-GUUGUAUG 18209 ): 120 gc 121 :+ 18210 UU 18211 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #28200,sp|AF356652.1|AF356652 Filobasidiella neoformans var. neoformans 5S ribosomal RNA, 17S ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 25S ribosomal RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUUC hit 35 : 1419 1537 (fwd) 114.35 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::C:GCCAUAGC :::::+ A:CACCC:::CCC+UCC G:+C::GGAAG:UAAG::: 1419 AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCC-GAUCCAGGAAGUUAAGCUG 1477 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :: AGCGC: ::+UAGUAC: CGGUGGG GACCACGUG:GAAU :: :GU GC:G::: : 1478 AAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGU-GCCGUGGUU 1536 : 121 c 121 C 1537 C 1537 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #34825,sp|AF448480.1|AF448480 Colletotrichum coccodes isolate DAOM 183088 SCAR marker, complete sequence. ----isReversed: 1 ----hitSequence: ACAUGCGACCAUACCCACUGGAGAACUCGGGAUCCCGUCCGCUCUCCCAUCGAUAAACCAGUGAGGGCUGGAGUAGUAGUUGGGUCGGUGACGACCAGCGAAUGCCCGGUGUUGCAUGUC hit 36 : 183 64 (rev) 101.07 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C::GCG:CCAUA:C A::GG+ A C C :GA:CCC+UCC G:+CUC: A G UAA+CC 440 ACAUGCGACCAUACCCACUGGAGAACUCGGGAUCCCGUCC-GCUCUCCCAuCGAUAAACC 498 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 ::U AG:GC:G::GUAGUA+: +GGU:GGUGAC:AC+ G:+AAU :: :GU G:UGC::G 499 AGUGAGGGCUGGAGUAGUAGUUGGGUCGGUGACGACCAGCGAAUGCCCGGU-GUUGCAUG 557 ): 120 gc 121 :C 558 UC 559 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #36304,sp|AF467695.1|AF467695 Pichia angusta 5S ribosomal RNA gene and 5S-25S intergenic spacer region, complete sequence; and 25S ribosomal RNA gene, partial sequence. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGCUAAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 37 : 954 1074 (fwd) 106.74 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 954 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 1012 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GCC :: AGUA+:G GUGGG GACCA +G:+AA ::AGGU GCUGC:A 1013 GCUAAGAGCCUGACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGU-GCUGCAA 1071 )): 119 ggc 121 +:+ 1072 UCU 1074 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39674,sp|AF543841.1|AF543841 Kluyveromyces marxianus 26S ribosomal RNA, 18S ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence. ----isReversed: 1 ----hitSequence: GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 38 : 4299 4179 (rev) 107.24 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C A:::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 4500 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 4558 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 ::U AG:GCC :: AGUA+:G GUGGGUGACCA +G:+AA ::AGGU GCUGC:A 4559 GGUAAGAGCCUGACcGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGU-GCUGCAA 4617 )): 119 ggc 121 +:+ 4618 UCU 4620 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39787,sp|X00690.1|AFRN01 Aspergillus flavus 5S ribosomal RNA sequence ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUCCUGUUGUAUGU hit 39 : 1 119 (fwd) 87.86 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+ AA A ::::CCC+UCC G:+C::: A UUAAGCC 1 ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG : ::+UAGUA+: +GGUGGGUGACCAC+ G:+AAU :: : U G:UG:::G 60 ACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUCCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39909,sp|X00074.1|AGHEYSV2 Coprinus radiatus 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 40 : 1 118 (fwd) 120.04 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39946,sp|X99087.1|AI5SRRNA A.immersus 5S rRNA gene, a-type ----isReversed: 0 ----hitSequence: ACAUACGGCCAUAGAUUGAAGAAUAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUUCUAAUCGCCAAGUUAGUACUGCGGUGGGUGACCACGCGGGAAUCCUUGGUGCUGUAUGUU hit 41 : 1755 1874 (fwd) 116.09 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CGGCCAUAG: G::G+A A:AC :GA:CCC+UCC G:+CUC: A A:U AAGC: 1755 ACAUACGGCCAUAGAUUGAAGAAUAUACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAGCU 1813 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C A:CGCC A:+UAGUACUGCGGUGGGUGACCACG+GGGAAU :U GGU GCUG:::G 1814 UCUAAUCGCCAAGUUAGUACUGCGGUGGGUGACCACGCGGGAAUCCUUGGU-GCUGUAUG 1872 ): 120 gc 121 :+ 1873 UU 1874 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39947,sp|X99088.1|AI5SRRNA1 A.immersus 5S rRNA genes, b3 & b1 types ----isReversed: 0 ----hitSequence: ACAUACGGCCAUAGAUUGAAGAGAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAACUUCUAAUCGCCAAGUUAGUACUGCGGUGGGUGACCACGCAGGAAUCCUUGGUGCUGUAUAUC hit 42 : 113 232 (fwd) 97.83 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 : :::CGGCCAUAG: G::G+ AA:AC :GA:CCC+UCC G:+CUC: A A:U AA+C: 113 ACAUACGGCCAUAGAUUGAAGAGAAUACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAACU 171 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C A:CGCC A:+UAGUACUGCGGUGGGUGACCACG+ GGAAU :U GGU GCUG::: 172 UCUAAUCGCCAAGUUAGUACUGCGGUGGGUGACCACGCAGGAAUCCUUGGU-GCUGUAUA 230 ): 120 gc 121 :C 231 UC 232 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39947,sp|X99088.1|AI5SRRNA1 A.immersus 5S rRNA genes, b3 & b1 types ----isReversed: 0 ----hitSequence: ACAUACGGCCAUAGAUGGAAGAAUACACGGGAUCCCGUCUGCUCUCCCAUAGUUAACCUUUCAAUCGCCUAGCUAGUACUGCGGUGGGUGACCACGCAGGAAUCCUUGGUGCUGUAUGUU hit 43 : 531 650 (fwd) 108.32 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CGGCCAUAG: : ::G+A ACAC :GA:CCC+UC G:+CUC: A AGUUAA C: 531 ACAUACGGCCAUAGAUGGAAGAAUACACGGGAUCCCGUCU-GCUCUCCCAuAGUUAACCU 589 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 : : A:CGCC A: UAGUACUGCGGUGGGUGACCACG+ GGAAU :U GGU GCUG:::G 590 UUCAAUCGCCUAGCUAGUACUGCGGUGGGUGACCACGCAGGAAUCCUUGGU-GCUGUAUG 648 ): 120 gc 121 :+ 649 UU 650 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39948,sp|X99089.1|AI5SRRNA2 A.immersus 5S rRNA gene, b2-type ----isReversed: 0 ----hitSequence: CAUACGGCCAUAGAUUGAAGAAUAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUUCUAAUCGCCUCGUUAGUACUGCGGUGGGUGACCACACGGGAAUCCGAGGUGCUGUAUGCU hit 44 : 299 417 (fwd) 109.76 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 C:::CGGCCAUAG: G::G+A A:AC :GA:CCC+UCC G:+CUC: A A:U AAGC: 299 -CAUACGGCCAUAGAUUGAAGAAUAUACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAGCU 356 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C A:CGCC ::+UAGUACUGCGGUGGGUGACCAC +GGGAAU ::AGGU GCUG:::G 357 UCUAAUCGCCUCGUUAGUACUGCGGUGGGUGACCACACGGGAAUCCGAGGU-GCUGUAUG 415 ): 120 gc 121 ++ 416 CU 417 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #39949,sp|X99090.1|AI5SRRNA3 A.immersus 5S rRNA gene, c-type ----isReversed: 0 ----hitSequence: ACGGCCAUAGAUUGAAGAUCAGACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUUCAAAUCGCCUAGUUAGUACUGCGGUGGGUGACCACGCG hit 45 : 237 330 (fwd) 28.05 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 +CGGCCAUAG: :G::G+ A AC :GA:CCC+UCC G:+CUC: A A U AAGC: 237 ----ACGGCCAUAGAUUGAAGAUCAGACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAGCU 291 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C: A:C C :+UAG:ACUG + + GUGGG : A: A G G 292 UCAAAUCGCCUAGUUAGUACUG----C-----G---GUGGGUG-ACCACGC-G------- 330 ): 120 gc 121 - -- - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40361,sp|X00687.1|ANRN04 Aspergillus nidulans 5S ribosomal RNA (1) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCUACUGUUGUAUGU hit 46 : 1 119 (fwd) 90.97 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+ AA A ::::CCC+UCC G:+C::: A UUAAGCC 1 ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG : ::+UAGUA+: GGUGGGUGACCAC UG:+AAU :: : U G:UG:::G 60 ACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCUACU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40362,sp|X00688.1|ANRN05 Aspergillus nidulans 5S ribosomal RNA (2) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGU hit 47 : 1 119 (fwd) 100.56 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+AAA A ::::CCC+UCC G:+C::: A UUAAGCC 1 ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG C ::+UAGUA+: GGUGGGUGACCAC UG:+AAU ::AG U G:UG:::G 60 ACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40363,sp|X00689.1|ANRN06 Aspergillus nidulans 5S ribosomal RNA (3) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGU hit 48 : 1 119 (fwd) 97.03 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+ AA A ::::CCC+UCC G:+C::: A UUAAGCC 1 ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG C ::+UAGUA+: GGUGGGUGACCAC UG:+AAU ::AG U G:UG:::G 60 ACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40364,sp|X00691.1|ANRN07 Aspergillus niger 5S ribosomal RNA sequence ----isReversed: 0 ----hitSequence: ACAUACGACCACAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUUCUGUUGUAUGU hit 49 : 1 119 (fwd) 84.94 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCA AG:G:G:GG+AAA A ::::CCC+UCC G:+C::: A UUAAGCC 1 ACAUACGACCACAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG ::+UAGUA+: +GGUGGGUGACCAC+ G:+AAU :: U G:UG:::G 60 ACACGCCGGGAGGUUAGUAGUUGGGUGGGUGACCACCAGCGAAUCCCUUCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40367,sp|K03162.1|ANRRA A.nidulans 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: GCAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACAUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGC hit 50 : 1 119 (fwd) 97.40 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+AA A ::::CCC+UCC G:+C::: A UAAGCC 1 GCAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACAUAAGCC 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG C ::+UAGUA+: GGUGGGUGACCAC UG:+AAU ::AG U G:UG:::G 60 ACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCU-GUUGUAUG 118 ): 120 gc 121 : 119 C- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40368,sp|X03564.1|ANRRN5G1 Aspergillus nidulans 5S rRNA type 1 gene (clone pKS 6-12) ----isReversed: 0 ----hitSequence: ACAUACGACCACAGGGUGUGGAGAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCUACUGUUGUAUGUU hit 51 : 395 514 (fwd) 89.39 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCA AG:G:G:GG+ AA A ::::CCC+UCC G:+C::: A UUAAGCC 395 ACAUACGACCACAGGGUGUGGAGAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 453 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG : ::+UAGUA+: GGUGGGUGACCAC UG:+AAU :: : U G:UG:::G 454 ACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCUACU-GUUGUAUG 512 ): 120 gc 121 :+ 513 UU 514 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40369,sp|X03566.1|ANRRN5G2 Aspergillus nidulans 5S rRNA type 2 gene (clone pMN 912) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGUU hit 52 : 172 291 (fwd) 103.43 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+AAA A ::::CCC+UCC G:+C::: A UUAAGCC 172 ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 230 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG C ::+UAGUA+: GGUGGGUGACCAC UG:+AAU ::AG U G:UG:::G 231 ACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCU-GUUGUAUG 289 ): 120 gc 121 :+ 290 UU 291 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40370,sp|X03567.1|ANRRN5G3 Aspergillus nidulans 5S rRNA type 2 gene (clone pMN 1412) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCUGUUGUAUGUU hit 53 : 108 227 (fwd) 103.43 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+AAA A ::::CCC+UCC G:+C::: A UUAAGCC 108 ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 166 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG C ::+UAGUA+: GGUGGGUGACCAC UG:+AAU ::AG U G:UG:::G 167 ACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAGCU-GUUGUAUG 225 ): 120 gc 121 :+ 226 UU 227 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40371,sp|X03568.1|ANRRN5G4 Aspergillus nidulans 5S rRNA type 2 gene (clone pMN 24) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCCGCUCAGCCGUACUUAAGCCACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAUCUGUUGUAUGUC hit 54 : 68 187 (fwd) 98.83 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG:G:G:GG+AAA A ::::CCC+UCC G:+C::: A UUAAGCC 68 ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCC-GCUCAGCCGuACUUAAGCC 126 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :C:C :CG ::+UAGUA+: GGUGGGUGACCAC UG:+AAU ::A U G:UG:::G 127 ACACGCCGGCUGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCAUCU-GUUGUAUG 185 ): 120 gc 121 :C 186 UC 187 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40530,sp|X00864.1|AP5SRNA1 Acremonium persicinum 5S ribosomal RNA (1) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGCUCUCAGAGAACUCGGGAUCCCGUCUGCUCUCCUGUAGAUAAGCUGACAAGCGGCCGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCUGUUGUAUGU hit 55 : 1 119 (fwd) 86.95 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAGC :::G+ A C C :GA:CCC+UC G:+CUC: AG UAAGC: 1 ACAUACGACCAUAGCUCUCAGAGAACUCGGGAUCCCGUCU-GCUCUCCUGuAGAUAAGCU 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :: AGCG C ::+UAGUA+: +GGU:GGUGAC:AC+ G:+AAUA:: G U G:UG:::G 60 GACAAGCGGCCGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40531,sp|X00865.1|AP5SRNA2 Acremonium persicinum 5S ribosomal RNA (2) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGACGCUAGAAAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUGGCGAUCGGCGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCUGCUGUUGUAUGU hit 56 : 1 119 (fwd) 102.95 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG: :: :G+AAA:AC :GA:CCC+UCC G:+CUC: A A:U AAGC: 1 ACAUACGACCAUAGACGCUAGAAAAUACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAGCU 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :: A:CG CG::+UAGUA+: +GGU:GGUGAC:AC+ G:+AAUA:: G U G:UG:::G 60 GGCGAUCGGCGGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCUGCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40532,sp|X00866.1|AP5SRNA3 Acremonium persicinum 5S ribosomal RNA (3) ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGCGCUAGAAAAUACGGGAUCCCGUCCGCUCUCCCAUAGUCAAGCUGGCGACCGGCUGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCUGUUGUAUGU hit 57 : 1 119 (fwd) 102.28 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG: :: :G+AAA:AC :GA:CCC+UCC G:+CUC: A A:U AAGC: 1 ACAUACGACCAUAGGCGCUAGAAAAUACGGGAUCCCGUCC-GCUCUCCCAuAGUCAAGCU 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :: A:CG C ::+UAGUA+: +GGU:GGUGAC:AC+ G:+AAUA:: G U G:UG:::G 60 GGCGACCGGCUGAUUAGUAGUUGGGUCGGUGACGACCAGCGAAUACCGGCU-GUUGUAUG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40714,sp|X06849.1|AS5SRNA Aessosporon salmonicolor 5S rRNA ----isReversed: 0 ----hitSequence: AUCUGCGGCCAUACCGCGAUGAACCCUCCGCGUCUCGUCCGAUCCGCGCAGAUAAGCAUCGCAGGGGCCAGAGAGUAUUGACGUGGGUGACCAGUCGAGAACACUGUGCUGCCGCAGGU hit 58 : 1 119 (fwd) 96.62 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::::GC:GCCAUA:CG:G::G+A C CC:::UC C+UCC GA+C:::G+AG UAAGC:: 1 AUCUGCGGCCAUACCGCGAUGAACCCUCCGCGUCUCGUCC-GAUCCGCGCAGAUAAGCAU 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>-.>>>,)))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUA.GGUCGCuGCcag 119 C:CAG:G C A: AGUA: G GUGGGUGACCA +G :AA+A:U G U GC:GC::: 60 CGCAGGGGCCAGAGAGUAUUGACGUGGGUGACCAGUCGAGAACACUGuGCU-GCCGCAGG 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #40797,sp|M35573.1|ASRRA A.solani 5S rRNA. ----isReversed: 0 ----hitSequence: AGGUGCGACCAUACCGUGUUGAAAAUUCUGCAUCCCGUCCGAUCUGCAAAGACAAGCAACACAGGGCCCAGUCAGUAGUGCGGUGGGUGACCACGUGCGAAUACUGUGGUGUUGCACUU hit 59 : 1 119 (fwd) 115.28 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+::GCG:CCAUA:CG:G::G+AA : C:::AUCCC+UCC GA+CU:::AA: AAGC:: 1 AGGUGCGACCAUACCGUGUUGAAAAUUCUGCAUCCCGUCC-GAUCUGCAAAGACAAGCAA 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>.>,)))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGG.UCGCuGCcag 119 C:CAG:GC A:+ AGUA+:GCGGUGGGUGACCACGUG:+AAUA:U G U G:UGC::+ 60 CACAGGGCCCAGUCAGUAGUGCGGUGGGUGACCACGUGCGAAUACUGUGgU-GUUGCACU 118 ): 120 gc 121 : 119 U- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #46298,sp|AY198397.1|AY198397 Candida glabrata strain CBS 138 5S ribosomal RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCCACAAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUUGUGAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 60 : 234 354 (fwd) 107.17 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C A:::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 234 GGUUGCGGCCAUAUCCACAAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 292 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 ::U AG:GCC :: AGUA+:G GUGGGUGACCA +G:+AA ::AGGU GCUGC:A 293 UGUGAGAGCCUGACcGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGU-GCUGCAA 351 )): 119 ggc 121 +:+ 352 UCU 354 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #46300,sp|AY198399.1|AY198399 Kluyveromyces delphensis strain CBS 2170 5S ribosomal RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCCACAAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUUGUGAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 61 : 812 932 (fwd) 107.17 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C A:::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 812 GGUUGCGGCCAUAUCCACAAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 870 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 ::U AG:GCC :: AGUA+:G GUGGGUGACCA +G:+AA ::AGGU GCUGC:A 871 UGUGAGAGCCUGACcGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGU-GCUGCAA 929 )): 119 ggc 121 +:+ 930 UCU 932 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #46558,sp|AY211522.1|AY211522 Heterobasidion annosum microsatellite-motif-based amplification product CT1350. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUUU hit 62 : 463 581 (fwd) 124.32 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 463 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 521 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 522 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 580 : 121 c 121 + 581 U 581 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #48009,sp|AY259631.1|AY259631 Nosema bombycis large subunit ribosomal RNA gene, internal transcribed spacer, small subunit ribosomal RNA gene, intergenic spacer region, and 5S ribosomal RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUACGGUCAUAUCUACUGAAAACCACUGGAACCCACCAGAACUCCGAAGUUAAACCAGAUGAGCUUAAUCAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGUGCUGUA hit 63 : 4331 4442 (fwd) 70.79 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +::CGG:CAUA:C ::G:+AA:CAC::GA:CCCA C G:ACUC::AAG:UAA+:C: 4331 --AUACGGUCAUAUCUACUGAAAACCACUGGAACCCACCA-GAACUCCGAAGUUAAACCA 4387 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 : + G:GC: A:+ AGUACU G+ GGG GACCAC UGGGAA+ :U :GU :CUG:: 4388 GAU-GAGCUUAAUCAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGU-GCUGUA--- 4442 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #49756,sp|X06854.1|BA5SRNA Bjerkandera adusta 5S rRNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU hit 64 : 1 118 (fwd) 122.69 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::GAAG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGAAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50110,sp|M36313.1|BMRRAA Basidiobolus magnus 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AGCAUCGGCCAUACAUACCAGAAAAUACCGGAUCCCGUCCGAUCUCCGAAGUCAAACUGGUAAUGGCCUAGUCAGUACUACGGUGGGGGACCACGUGGGAAUACUAGGUGCUGAUGUUU hit 65 : 2 120 (fwd) 131.88 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+:::CGGCCAUA:: A:::G+AAA:ACC:GAUCCC+UCC GA+CUC:GAA:U AA+C:: 2 AGCAUCGGCCAUACAUACCAGAAAAUACCGGAUCCCGUCC-GAUCUCCGAAGUCAAACUG 60 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U A::GCC A:+ AGUACU CGGUGGG GACCACGUGGGAAUA:UAGGU GCUG:::+: 61 GUAAUGGCCUAGUCAGUACUACGGUGGGGGACCACGUGGGAAUACUAGGU-GCUGAUGUU 119 : 121 c 121 + 120 U 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50236,sp|X01543.1|BSRRN5S Blastocadiella simplex (water mold) 5S ribosomal RNA ----isReversed: 0 ----hitSequence: AGCUACGGCCAUACACACCAGAAAGCUCCGCAUCCCGUCCGAUCUGCGAAGAUAAUCUGGUGCUGGCGCGGUCAGUACUGUCGUGGGAGACCAGAUGGGAAUACCGCGUGCUGUAGUU hit 66 : 1 118 (fwd) 109.93 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+:::CGGCCAUA:: A:::G+AA:C CC::AUCCC+UCC GA+CU::GAAG:UAA C:: 1 AGCUACGGCCAUACACACCAGAAAGCUCCGCAUCCCGUCC-GAUCUGCGAAGAUAAUCUG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U ::GC: ::+ AGUACUG GUGGG GACCA UGGGAAUA:: :GU GCUG:::+: 60 GUGCUGGCGCGGUCAGUACUGUCGUGGGAGACCAGAUGGGAAUACCGCGU-GCUGUAGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50286,sp|M36311.1|BTRRAA B.trispora 5S rRNA. ----isReversed: 0 ----hitSequence: AGCUACGGCCAUAUAAUACCGAAAGCACCGGAUCCCGUCCGAUCUCCGCAGUUAAACGGUAUAUAGAUCAGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACUGGUUGCUGUAGUUU hit 67 : 2 120 (fwd) 128.54 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+:::CGGCCAUA::+::::G+AA:CACC:GAUCCC+UCC GA+CUC:G+AG:UAA+C:: 2 AGCUACGGCCAUAUAAUACCGAAAGCACCGGAUCCCGUCC-GAUCUCCGCAGUUAAACGG 60 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+A::G:: A:+ AGUACU GGUGGG GACCAC UGGGAAUA:U ::U GCUG:::+: 61 UAUAUAGAUCAGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACUGGUU-GCUGUAGUU 119 : 121 c 121 + 120 U 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50317,sp|D10525.1|CA1691 Candida azyma 5S rRNA. ----isReversed: 0 ----hitSequence: GCCUACGGUCAUAUCAAUGCGAAUAUACGAUUUCCCGUCUGAUCAAUCAUAGUCAAACGCGUUAGAGCCACAUUCAGUAUUACGGUGGGAGACCACGUGAGAACGGGUGGUACUGAAGGU hit 68 : 1 120 (fwd) 78.65 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 C:: CGG:CAUA:C+A G:G+A A:AC :::UCCC+UC GA+C::: A A:U AA+C: 1 GCCUACGGUCAUAUCAAUGCGAAUAUACGAUUUCCCGUCU-GAUCAAUCAuAGUCAAACG 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 C U+AG:GCC ::+ AGUA: CGGUGGG GACCACGUG :AA+ :: GGU :CUG :: 60 CGUUAGAGCCACAUuCAGUAUUACGGUGGGAGACCACGUGAGAACGGGUGGU-ACUGAAG 118 )): 119 ggc 121 G 119 GU- 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50347,sp|X00868.1|CA5SRNA Candida albicans 5S ribosomal RNA ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCCCCGUUCGAUCAACCGUAGUUAAGCUGCUAAGAGCAAUACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUGUGCUGCAAUCU hit 69 : 1 121 (fwd) 90.35 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC::::CCC+U+C G:+C::: G AG:UAAGC: 1 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCCCCGUUC-GAUCAACcGUAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GC: :: AGUA+:G GUGGG GACCA +G:+AA :: :GU GCUGC:A 60 GCUAAGAGCAAUACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUGU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50376,sp|X16634.1|CAARS5S Candida albicans DNA of an autonomously replicating sequence (ARS) and 5S rRNA ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCCCCGUUCGAUCAACCGUAGUUAAGCUGCUAAGAGCAAUACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUGUGCUGCAAUCU hit 70 : 937 1057 (fwd) 90.35 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC::::CCC+U+C G:+C::: G AG:UAAGC: 937 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCCCCGUUC-GAUCAACcGUAGUUAAGCU 995 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GC: :: AGUA+:G GUGGG GACCA +G:+AA :: :GU GCUGC:A 996 GCUAAGAGCAAUACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUGU-GCUGCAA 1054 )): 119 ggc 121 +:+ 1055 UCU 1057 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #50950,sp|D10534.1|CC14830 Candida cylindracea 5S rRNA. ----isReversed: 0 ----hitSequence: AGCUACGGCCAUAUCUAGCAGUCAGCACCGUUUCCCGUCCGAUCAACAGUAGUGAAUCUGCUAAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGUAGUUU hit 71 : 1 121 (fwd) 92.48 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+:::CGGCCAUA:C AG::G A:CACC:::UCCC+UCC GA+C::: G AG: AA C: 1 AGCUACGGCCAUAUCUAGCAGUCAGCACCGUUUCCCGUCC-GAUCAACaGUAGUGAAUCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GCC :: AGUA+:G GUGGG GACCA +G:+AA ::AGGU GCUG::: 60 GCUAAGAGCCUGACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGU-GCUGUAG 118 )): 119 ggc 121 +:+ 119 UUU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51106,sp|K02344.1|CCRN5S Coprinus cinereus (mushroom) 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCUCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 72 : 1 118 (fwd) 116.63 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGC: A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U :GU GCUG::: : 60 AGUGCCGCUCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51109,sp|M35577.1|CCRRA01 C.cornigerum 5S rRNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUUCGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCGGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 73 : 1 118 (fwd) 116.94 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+:: :G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C: 1 AUCCACGGCCAUAGGACUUCGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCGG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51169,sp|D10527.1|CD1848 Candida diversa 5S rRNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCGGAAAGCACCGUUUCCCGUCCGAUCAACUGCAGUUAAGCCGCUGAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGCAAUC hit 74 : 1 120 (fwd) 105.81 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG:GG+AA:CACC:::UCCC+UCC GA+C::: G+AG:UAAGCC 1 GGUUGCGGCCAUAUCUAGCGGAAAGCACCGUUUCCCGUCC-GAUCAACuGCAGUUAAGCC 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GCC :: AGUA+:G GUGGG GACCA +G:+AA ::AGGU GCUGC:A 60 GCUGAGAGCCUGACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGU-GCUGCAA 118 )): 119 ggc 121 +: 119 UC- 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51235,sp|M36310.1|CERRAA Cunninghamella elegans 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AGUUACGGCCACAUCAUCGUGAAAAGACCAAAUCCCGUCCGAUCUUUGCAGUCAAACACGAUCGAGCUUCGUCAGUACUAUGGUGAGAGAUCACAUGGGAAUACGAAGUGCUGUAAUUU hit 75 : 2 120 (fwd) 115.65 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+U::CGGCCA A:C+::G:G+AAA ACC::AUCCC+UCC GA+CU::G+A U AA+C:C 2 AGUUACGGCCACAUCAUCGUGAAAAGACCAAAUCCCGUCC-GAUCUUUGCAGUCAAACAC 60 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ G:GC: ::+ AGUACU GGUG:G GA:CAC UGGGAAUA::A:GU GCUG::A+: 61 GAUCGAGCUUCGUCAGUACUAUGGUGAGAGAUCACAUGGGAAUACGAAGU-GCUGUAAUU 119 : 121 c 121 + 120 U 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51623,sp|D10531.1|CH1457 Cryptococcus humicolus 5S rRNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCAGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCUAGCUGAGUACCGCCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAUCCUGGGUGUCGUGGUU hit 76 : 1 118 (fwd) 115.19 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::C::CCAUAG:+::::G+AAA:ACC::AUCCC+UCC GA+CU::GAA:U AGC:: 1 AUCCACGGCCAUAGGACUCAGAAAAUACCGCAUCCCGUCC-GAUCUGCGAAGUCUAGCUG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+A:CGCC A:+UAGUAC: GGUGGG GACCAC UG:GAAU :U GGU G::G::: : 60 AGUACCGCCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAUCCUGGGU-GUCGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51900,sp|D10532.1|CM1446 Candida magnoliae 5S rRNA. ----isReversed: 0 ----hitSequence: AGCUGCGGCCAAACCCAGGUGAAUACAAGACUUCCCGUCCGAUCAGUCCUAUUUAAACACCUGAGGGCCUUACCAAGUAUUGUAGUGGGAGACCAUACGAGAACAGAAGGUGCUGCAGUU hit 77 : 1 120 (fwd) 82.83 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+::GCGGCCA A:C AGG:G+A A A :::UCCC+UCC GA+C::: + A UUAA+C: 1 AGCUGCGGCCAAACCCAGGUGAAUACAAGACUUCCCGUCC-GAUCAGUCCuAUUUAAACA 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 CCU AG:GCC :: +AGUA: G GUGGG GACCA +G :AA+A::AGGU GCUGC:: 60 CCUGAGGGCCUUACcAAGUAUUGUAGUGGGAGACCAUACGAGAACAGAAGGU-GCUGCAG 118 )): 119 ggc 121 +: 119 UU- 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #51901,sp|D10526.1|CM1613 Candida melibiosica 5S rRNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUACCAAGUGGAAAAUACUGUUUCCCGUCCGAUCAACGUUAGUCAAGCCACUUAGGGCCACAGUGAGUAAUACAGUGGGAGACCAUGUGUGAAAUUGUGGUGCUGCAAUCU hit 78 : 1 121 (fwd) 100.38 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :+U:GCGGCCAUA:C+AG:GG+AAA:AC::::UCCC+UCC GA+C:::: A:U AAGCC 1 GGUUGCGGCCAUACCAAGUGGAAAAUACUGUUUCCCGUCC-GAUCAACGUuAGUCAAGCC 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU+AG:GCC ::G AGUA:+ C GUGGG GACCA GUG+:AA :: GGU GCUGC:A 60 ACUUAGGGCCACAGuGAGUAAUACAGUGGGAGACCAUGUGUGAAAUUGUGGU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #52038,sp|M36309.1|CMRRAA C.mojavensis 5S rRNA. ----isReversed: 0 ----hitSequence: AGCUGGGGCCAUAUGAACCUAUAAGUACCGCAUCCCGUCCCGAUCUGCGAAGUCAAGCAGGUUACAGCUCGGUUAGUACUAUGAUGGGAGACCACAUGGGAAUACCGGGUGUCCCAGCUU hit 79 : 1 120 (fwd) 118.63 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+::G ::CCAUA::+A:::: AA::ACC::AUCCC+UCCCGA+CU::GAA:: AAG::: 1 AGCUGGGGCCAUAUGAACCUAUAAGUACCGCAUCCCGUCCCGAUCUGCGAAGUCAAGCAG 60 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U+A::GC: ::+UAGUACU G+UGGG GACCAC UGGGAAUA:: :GU G:: C::+: 61 GUUACAGCUCGGUUAGUACUAUGAUGGGAGACCACAUGGGAAUACCGGGU-GUCCCAGCU 119 : 121 c 121 + 120 U 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #52137,sp|L14753.1|CNRG5S Filobasidiella neoformans 5S ribosomal RNA (5S rRNA) gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGCCUUCAUAGAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAACAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUU hit 80 : 1 118 (fwd) 112.80 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::C:GCCAUAGC :::::+ A:CACCC:::CCC+UCC G:+C::GGAAG:UAAG::: 1 AUCCACGGCCAUAGCCUUCAUAGAGCACCCUGCCCCGUCC-GAUCCAGGAAGUUAAGCUG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::CAGCGC: ::+UAGUAC: CGGUGGG GACCACGUG:GAAU :: :GU GC:G::: : 60 AACAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGU-GCCGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #52138,sp|L27078.1|CNRGASGA Filobasidiella neoformans neoformans 5S ribosomal RNA and intergenic spacer. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUUC hit 81 : 1228 1346 (fwd) 114.35 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::C:GCCAUAGC :::::+ A:CACCC:::CCC+UCC G:+C::GGAAG:UAAG::: 1228 AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCC-GAUCCAGGAAGUUAAGCUG 1286 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :: AGCGC: ::+UAGUAC: CGGUGGG GACCACGUG:GAAU :: :GU GC:G::: : 1287 AAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGU-GCCGUGGUU 1345 : 121 c 121 C 1346 C 1346 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #52139,sp|L27079.1|CNRGASGB Filobasidiella neoformans gattii 5S ribosomal RNA and intergenic spacer. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCCGAUCCAGGAAGUUAAGCUGAAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGUGCCGUGGUUC hit 82 : 1268 1386 (fwd) 114.35 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::C:GCCAUAGC :::::+ A:CACCC:::CCC+UCC G:+C::GGAAG:UAAG::: 1268 AUCCACGGCCAUAGCCUUCAUACAGCACCCUGCCCCGUCC-GAUCCAGGAAGUUAAGCUG 1326 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :: AGCGC: ::+UAGUAC: CGGUGGG GACCACGUG:GAAU :: :GU GC:G::: : 1327 AAGAGCGCUCGGUUAGUACCACGGUGGGGGACCACGUGGGAAUCCCGGGU-GCCGUGGUU 1385 : 121 c 121 C 1386 C 1386 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58703,sp|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephalitozoon cuniculi (Microspora) ----isReversed: 0 ----hitSequence: AGUUGCGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCUGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCACUCGGGAAUACCGGGUGCUGCAACUU hit 83 : 176782 176900 (fwd) 117.63 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+U:GCGGCCAUA:C A: G:+AA:CACC:GA:C C+UC G:+CUC:GAAG:UAAG:C 176782 AGUUGCGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCA-GAUCUCCGAAGUUAAGCCU 176840 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G:GCC ::GUAGUACUG G+ GGG GACCAC +GGGAAUA:: GGU GCUGC:A+: 176841 GUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCACUCGGGAAUACCGGGU-GCUGCAACU 176899 : 121 c 121 + 176900 U 176900 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58705,sp|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) ----isReversed: 1 ----hitSequence: AGUUACGGCCAUAUCCACUGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCAGUGCGAGCCUGGAUAGUACUGAGAAGGGAGACCGCUCGGGAAUCCCAGGUGCUGUAACUU hit 84 : 173041 172923 (rev) 116.17 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+U::CGGCCAUA:C A::G:+AA:CACC:GA:C C+UC G:+CUC:GAAG:UAAG:C: 53536 AGUUACGGCCAUAUCCACUGAAAAGCACCGGAACUCGUCA-GAUCUCCGAAGUUAAGCCA 53594 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G:GCC :: UAGUACUG G+ GGG GACC+C +GGGAAU ::AGGU GCUG::A+: 53595 GUGCGAGCCUGGAUAGUACUGAGAAGGGAGACCGCUCGGGAAUCCCAGGU-GCUGUAACU 53653 : 121 c 121 + 53654 U 53654 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58709,sp|AL590451.2|CNS07EGI chromosome IX of strain GB-M1 of Encephalitozoon cuniculi (Microspora) ----isReversed: 1 ----hitSequence: GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCCGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGUGCCGUAAUCU hit 85 : 53797 53679 (rev) 118.23 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C:GCCAUA:C A:GG:+AA:CACC:GA:C C+UC G:+CUC:GAAG:UAAG:CC 197206 GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCA-GAUCUCCGAAGUUAAGCCC 197264 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G:GCC ::GUAGUACUG G+ GGG GACC+C +GGGAAUA:: GGU GC:G::A:: 197265 GUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGU-GCCGUAAUC 197323 : 121 c 121 + 197324 U 197324 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58712,sp|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome 5 of Podospora anserina ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGACAGCUGAAAAUACGGCAUCCCGUCCGCUCUGCCCGAGUCAAACAGCUGAUCGCCAGACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCCUGGUGUUGUAUGUU hit 86 : 2517 2636 (fwd) 102.35 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUAG: AG::G+AAA:AC ::A:CCC+UCC G:+CU:: + A:U AA+C: 2517 ACAUACGACCAUAGACAGCUGAAAAUACGGCAUCCCGUCC-GCUCUGCCCgAGUCAAACA 2575 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 :CU A:CGCC :: UAGUACU GGUGGGUGACCAC GGGAAU :: GGU G:UG:::G 2576 GCUGAUCGCCAGACUAGUACUCAGGUGGGUGACCACUGGGGAAUCCCUGGU-GUUGUAUG 2634 ): 120 gc 121 :+ 2635 UU 2636 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58810,sp|D10535.1|CP1785 Candida parapsilosis 5S rRNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACAGUAGUUAAGCUGCUAAGAGCGAGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCUCGUGCUGCAAUCU hit 87 : 1 121 (fwd) 100.68 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 1 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCC-GAUCAACaGUAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GC: :: AGUA+:G GUGGG GACCA +G:+AA :: :GU GCUGC:A 60 GCUAAGAGCGAGACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCUCGU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58900,sp|M58383.1|CPRRA1 Christiansenia pallida 5S ribosmal rRNA. ----isReversed: 0 ----hitSequence: UCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGUGGU hit 88 : 2 119 (fwd) 114.32 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :C ::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 2 UC-CACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG:: G: 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGUGG 118 : 121 c 121 + 119 U 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58981,sp|D10533.1|CR1593 Candida rugopelliculosa 5S rRNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACUGCAGUUAAGCUGCUAAGAGCCUGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGUGCUGCAAUC hit 89 : 1 120 (fwd) 105.21 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC:::UCCC+UCC GA+C::: G+AG:UAAGC: 1 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCC-GAUCAACuGCAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GCC :: AGUA+:G GUGGG GACCA +G:+AA ::AGGU GCUGC:A 60 GCUAAGAGCCUGACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCAGGU-GCUGCAA 118 )): 119 ggc 121 +: 119 UC- 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #58982,sp|D10528.1|CR1619 Candida rugosa 5S rRNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUACCUAGUAGAAAGCACCAUUUCCCGUCCGAUCAAUUGCAGUUAAGCUACUAAGGGUCUGAUUGAGUAGUGUAGUGGGAGACCAUACGCGAAAUUCAGAUGCUGCAAUCU hit 90 : 1 121 (fwd) 104.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC:::UCCC+UCC GA+C::: G+AG:UAAGC: 1 GGUUGCGGCCAUACCUAGUAGAAAGCACCAUUUCCCGUCC-GAUCAAUuGCAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:G:C ::+ AGUA+:G GUGGG GACCA +G:+AA ::AG:U GCUGC:A 60 ACUAAGGGUCUGAUuGAGUAGUGUAGUGGGAGACCAUACGCGAAAUUCAGAU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59337,sp|M36316.1|CSRRAA C.sellatus 5S rRNA. ----isReversed: 0 ----hitSequence: UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCCGAUCUUUGAAGUUAAGCUGGUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGUGCCGUAGGUC hit 91 : 2 120 (fwd) 116.80 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 C ::C:GCCAU :: A:::G+AA:CACC::AUCCC+UCC GA+CU::GAAG:UAAGC:: 2 UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCC-GAUCUUUGAAGUUAAGCUG 60 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U A::GC: ::+ AGUACUG GGUGGG GACCAC +GGGAAUA:: :GU GC:G:: G 61 GUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGU-GCCGUAGGU 119 : 121 c 121 C 120 C 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59477,sp|X00573.1|CTRRN5S Coleosporium tussilaginis 5S ribosomal RNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU hit 92 : 1 118 (fwd) 121.75 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+:: :G+AAACACC::AUCCC+UCC GA+CU::G+AGUUAA C: 1 AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 60 GGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59501,sp|K01050.1|CUA Yeast (C.utilis) 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCUCCGUCCGAUCAACUGUAGUUAAGCUGCUAAGAGCCUGAUCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 93 : 1 121 (fwd) 102.26 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC:::::CC+UCC ::+C::: G AG:UAAGC: 1 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUCUCCGUCC-GAUCAACuGUAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GCC ::+ AGUA+:G GUGGGUGACCA +G:+AA ::AGGU GCUGC:A 60 GCUAAGAGCCUGAUcGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59575,sp|D10529.1|CZ1627 Candida zeylanoides 5S rRNA. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGCUAAGAGCGAGACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCUCGUGCUGCAAUCU hit 94 : 1 121 (fwd) 100.68 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C AG::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 1 GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 :CU AG:GC: :: AGUA+:G GUGGG GACCA +G:+AA :: :GU GCUGC:A 60 GCUAAGAGCGAGACcGAGUAGUGUAGUGGGAGACCAUACGCGAAACUCUCGU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59816,sp|M36307.1|DARRAA D.acuminosporus 5S rRNA. ----isReversed: 0 ----hitSequence: AGUUACGACCAUAUCAACUUGAAAGCACCACACCCCGUCAGAUCUGUGAAGUUAAGCAAGUUAGAGCUUCGUUAGUAGUUUGGUGGGGGACCACAAGCGAAUACGAAGUGCCGUAGCUU hit 95 : 1 119 (fwd) 115.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+ ::C::CCAUA:C+A:::G+AA:CACC::A:CCC+UC G:+CU::GAAG:UAAGC:: 1 AGUUACGACCAUAUCAACUUGAAAGCACCACACCCCGUCA-GAUCUGUGAAGUUAAGCAA 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U+AG:GC: ::+UAGUA+: GGUGGG GACCAC G:+AAUA::A:GU G::G:: +: 60 GUUAGAGCUUCGUUAGUAGUUUGGUGGGGGACCACAAGCGAAUACGAAGU-GCCGUAGCU 118 : 121 c 121 + 119 U 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #59867,sp|X00073.1|DDRRNA01 Dacrymyces deliquescens 5S ribosomal RNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACACUGAAAGCACCGCAUCCCGUCCGAUCUGCGAGUUAACCAGUGUGCCGCCCGGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 96 : 1 117 (fwd) 104.12 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G AG:UAA C:: 1 AUCCACGGCCAUAGGACACUGAAAGCACCGCAUCCCGUCC-GAUCUGCG-AGUUAACCAG 58 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC :+UAGUAC: CGGUGGG GACCACG+G:GAAU : GGU GCUG::: : 59 UGUGCCGCCCGGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 117 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60140,sp|M58382.1|EARRA Efibulobasidium albescens 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 97 : 1 118 (fwd) 119.92 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 60 AGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60202,sp|AJ005582.1|ECU5582 Encephalitozoon cuniculi 5S rRNA gene, IGS and partial gene encoding guanylyl transferase ----isReversed: 0 ----hitSequence: GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCAGAUCUCCGAAGUUAAGCCCGUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGUGCCGUAAUCU hit 98 : 157 275 (fwd) 118.23 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C:GCCAUA:C A:GG:+AA:CACC:GA:C C+UC G:+CUC:GAAG:UAAG:CC 157 GAUUACGGCCAUAUCCACGGAAAAGCACCGGAACUCGUCA-GAUCUCCGAAGUUAAGCCC 215 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U G:GCC ::GUAGUACUG G+ GGG GACC+C +GGGAAUA:: GGU GC:G::A:: 216 GUGCGAGCCUGGGUAGUACUGAGAAGGGAGACCGCUCGGGAAUACCGGGU-GCCGUAAUC 274 : 121 c 121 + 275 U 275 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60273,sp|M58368.1|EGRRA Exidia glandulosa 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACUGCAGCCCGUCCGAUCUGCAAAGUUAACCAGAGUACCGCUCAGUUAGUACCAUGGUGGGGGACCAUGCGGGAAUCCUGGGUGCUGUGGUU hit 99 : 1 118 (fwd) 108.15 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CAC:::A:CCC+UCC G:+CU:::AAG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACUGCAGCCCGUCC-GAUCUGCAAAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+A:CGC: A:+UAGUAC: GGUGGG GACCA G+G:GAAU :U :GU GCUG::: : 60 AGUACCGCUCAGUUAGUACCAUGGUGGGGGACCAUGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60614,sp|X00574.1|ESRRN5S Endophyllum sempervivi 5S ribosomal RNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU hit 100 : 1 118 (fwd) 122.26 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 1 AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 60 GGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60681,sp|X00069.1|EVRRNA1 Exobasidium vaccini 5S rRNA ----isReversed: 0 ----hitSequence: AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCACGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAGUU hit 101 : 1 118 (fwd) 136.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : ::GCGGCCAUAG:+::G:G+AAA:ACC::AUCCC+UCC GA+CU::GAA:U AAGC:C 1 AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCC-GAUCUGCGAAGUCAAGCAC 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+A:CGCC A:+ AGUACUGCGGUGGG GACCACG+GGGAAU :U GGU GCUGC:: : 60 GGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGCAGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60718,sp|X06851.1|FC5SRNA Filobasidium capsuligenum 5S rRNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAACACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU hit 102 : 1 118 (fwd) 122.77 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AAACACC::AUCCC+UCC GA+CU::G+AGUUAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAACACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60737,sp|L79956.1|FDLRR5S Filobasidiella depauperata 5S ribosomal RNA (5S rRNA). ----isReversed: 0 ----hitSequence: CCUCGGCCAUAGCCUUUGCAUGAAAUACCACGUCCCGUCCGAUCCGUGAAGUCAAGUUGCAUAUCGCUCGGUUAGUACCAAGGUGGGGGACCACUUGGGAAUCCCGGGUGCCGAGGU hit 103 : 3 119 (fwd) 86.43 bits (((((((((,,,,<<..-<<<<<---<<--<<<<<<_______>>-->>>>-->>----> 1 ccugGCgGCCAUAGC..GagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGC 58 :::C:GCCAUAGC :G:::GAAA:ACC:::UCCC+UCC GA+C:::GAA:U AAG: 3 --CCUCGGCCAUAGCcuUUGCAUGAAAUACCACGUCCCGUCC-GAUCCGUGAAGUCAAGU 59 >>>>--.>><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))) 59 cccucA.GCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCc 117 ::C:+A CGC: ::+UAGUAC: GGUGGG GACCAC UG:GAAU :: :GU GC:G:: 60 UGCAUAu-CGCUCGGUUAGUACCAAGGUGGGGGACCACUUGGGAAUCCCGGGU-GCCGAG 117 ))): 118 aggc 121 :+ 118 GU-- 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #60765,sp|X06850.1|FF5SRNA Filobasidium floriforme 5S rRNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU hit 104 : 1 118 (fwd) 122.26 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 1 AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 60 GGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #61455,sp|X73589.1|GA5SRRNA G.applanatum 5S rRNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCCGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAACCGGAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGGUU hit 105 : 1 118 (fwd) 119.90 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::GAAG:UAA C:: 1 AUCCACGGCCAUAGGACUCCGAAAGCACCGCAUCCCGUCC-GAUCUGCGAAGUUAACCGG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :U GGU GCUG::: : 60 AGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #61527,sp|K03166.1|GCKRRA Gymnosporangium clavariaeforme 5S ribosomal RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGGUU hit 106 : 1 118 (fwd) 121.75 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+:: :G+AAACACC::AUCCC+UCC GA+CU::G+AGUUAA C: 1 AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A:+UAGUAC: CGGUGGG GACCACG+G:GAAU :UAGGU GCUG::: : 60 GGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #61788,sp|M36315.1|GHRRAA G.hibernus 5S rRNA. ----isReversed: 0 ----hitSequence: UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCCGAUCUUUGAAGUUAAGCUGGUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGUGCCGUAAGUC hit 107 : 3 121 (fwd) 120.11 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 CU::C:GCCAU :: A:::G+AA:CACC::AUCCC+UCC GA+CU::GAAG:UAAGC:: 3 UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCC-GAUCUUUGAAGUUAAGCUG 61 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U A::GC: ::+ AGUACUG GGUGGG GACCAC +GGGAAUA:: :GU GC:G::AG 62 GUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGU-GCCGUAAGU 120 : 121 c 121 C 121 C 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #62060,sp|M35575.1|GPRRA G.phoenicis 5S rRNA. ----isReversed: 0 ----hitSequence: AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCACGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAGUU hit 108 : 1 118 (fwd) 136.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : ::GCGGCCAUAG:+::G:G+AAA:ACC::AUCCC+UCC GA+CU::GAA:U AAGC:C 1 AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCC-GAUCUGCGAAGUCAAGCAC 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+A:CGCC A:+ AGUACUGCGGUGGG GACCACG+GGGAAU :U GGU GCUGC:: : 60 GGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGU-GCUGCAGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #63432,sp|M19949.1|KLMRRA Kluyveromyces lactis 5S ribosomal RNA gene, complete sequence. ----isReversed: 0 ----hitSequence: GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU hit 109 : 1 121 (fwd) 107.24 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>.>-->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCg.GAAGuUAAGCc 59 :+U:GCGGCCAUA:C A:::G+AA:CACC:::UCCC+UCC GA+C::: G AG:UAAGC: 1 GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCC-GAUCAACuGUAGUUAAGCU 59 >>>-->><<<-<<-.---<-<<-----<<____>>----->>->-->>->>>,))))))) 60 ccucAGCGCCgAuG.uAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCca 118 ::U AG:GCC :: AGUA+:G GUGGGUGACCA +G:+AA ::AGGU GCUGC:A 60 GGUAAGAGCCUGACcGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGU-GCUGCAA 118 )): 119 ggc 121 +:+ 119 UCU 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #63531,sp|M58387.1|KMRRA Kabatiella microsticta 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: ACACACGGCCACAGUCAGCUGAAAACUGGGCAUCCCGUCCGCUCUGCCAUACAUAAGCAGUUGAACGGCAGAUUAGUACCACGGUGGGUGACCACCUGGGAAUCCCUGCUGCAGAYUGUU hit 110 : 1 120 (fwd) 70.56 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C: C GCCA AG: A ::G+AA ::A:CCC+UCC G:+CU:: A A UAAGC: 1 ACACACGGCCACAGUCAGCUGAAAACUGGGCAUCCCGUCC-GCUCUGCCAuACAUAAGCA 59 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 : U A:CG C ::+UAGUAC: CGGUGGGUGACCAC+UG:GAAU :: G U GC G :G 60 GUUGAACGGCAGAUUAGUACCACGGUGGGUGACCACCUGGGAAUCCCUGCU-GCAGAYUG 118 ): 120 gc 121 :+ 119 UU 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #63842,sp|M36308.1|LMRRAA L.macrospora 5S rRNA. ----isReversed: 0 ----hitSequence: AGUAACGGCCAUAUCAGCUUGAAAGCACCGCAACCCGUCAGAUCUGCGAAGUUAAGCAAGCUAGAGCUAGGUUAGUACUAUGGUGGGGGACCACAUGGGAAUACUUAGUGUCGUUAUUU hit 111 : 1 119 (fwd) 123.84 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+U::C::CCAUA:C+::::G+AA:CACC::A:CCC+UC G:+CU::GAAG:UAAGC:: 1 AGUAACGGCCAUAUCAGCUUGAAAGCACCGCAACCCGUCA-GAUCUGCGAAGUUAAGCAA 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+AG:GC: :+UAGUACU GGUGGG GACCAC UGGGAAUA: :GU G::G::A+: 60 GCUAGAGCUAGGUUAGUACUAUGGUGGGGGACCACAUGGGAAUACUUAGU-GUCGUUAUU 118 : 121 c 121 + 119 U 119 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #63871,sp|M58384.1|LPRRA Lycoperdon pyriforme 5S ribosomal RNA. ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCAGAGUGCCGCCUAGUUAGUACCACGGAGGGGGACCACGCGGGAAUCUUGGGUGCUGUGGUU hit 112 : 1 118 (fwd) 109.46 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AA:CACC::AUCCC+UCC GA+CU::G+AG:UAA C:: 1 AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC-GAUCUGCGCAGUUAACCAG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 ::+ :CGCC A +UAGUAC: CGG GGG GACCACG+G:GAAU U GGU GCUG::: : 60 AGUGCCGCCUAGUUAGUACCACGGAGGGGGACCACGCGGGAAUCUUGGGU-GCUGUGGUU 118 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64259,sp|M36312.1|MFRRAA M.formosensis 5S rRNA. ----isReversed: 0 ----hitSequence: AAUUACGGCCAUACACAGGAGAAAGCUCCGCAUCCCGUUCGAUCUGCGCAGAUAACCUCCUGAUGGCAGGGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACCCUGUGCUGUAAUUU hit 113 : 2 120 (fwd) 116.87 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::CGGCCAUA:: AGG:G+AA:C CC::AUCCC+U+C GA+CU::G+AG:UAA C:C 2 AAUUACGGCCAUACACAGGAGAAAGCUCCGCAUCCCGUUC-GAUCUGCGCAGAUAACCUC 60 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 CU A::GC:G::+ AGUACU GGUGGG GACCAC UGGGAAUA:: :GU GCUG::A:: 61 CUGAUGGCAGGGUCAGUACUAUGGUGGGGGACCACAUGGGAAUACCCUGU-GCUGUAAUU 119 : 121 c 121 + 120 U 120 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64409,sp|X00575.1|MJRRN5S Microstroma juglandis 5S ribosomal RNA ----isReversed: 0 ----hitSequence: AUCCACGGCCAUAGGACACAGAAAACAUCGCAUCCCGUCCGAUCUGCGCAAUCAAGCUGUGUACCGCCCAGUCAGUACCGGAGUGGGGGACCAUCCGGGAAUCCUGCCAGGUGCUGUGGUU hit 114 : 1 121 (fwd) 99.47 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 : :::CGGCCAUAG:+::::G+AAA A C::AUCCC+UCC GA+CU::G+A U AAGC:: 1 AUCCACGGCCAUAGGACACAGAAAACAUCGCAUCCCGUCC-GAUCUGCGCAAUCAAGCUG 59 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>-...>>>,)))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUA...GGUCGCuGCc 117 ::+A:CGCC A:+ AGUAC:G+ GUGGG GACCA ++G:GAAU :U GGU GCUG:: 60 UGUACCGCCCAGUCAGUACCGGAGUGGGGGACCAUCCGGGAAUCCUGccaGGU-GCUGUG 118 ))): 118 aggc 121 : : 119 GUU- 121 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64741,sp|D14631.1|NB5SRNA N.bombycis 5S ribosomal RNA, partial sequence. ----isReversed: 0 ----hitSequence: AUACGGUUAUAUUUACUGAAAACCACCGGAACCCAUCAGAACUCCGAAGUUAAACCAGUAUGAGCUUAAUUAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGUGGUA hit 115 : 2 112 (fwd) 76.09 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +::CGG: AUA:: A::G:+AA:CACC:GA:CCCAUC G:ACUC:GAAG:UAA+:C: 2 --AUACGGUUAUAUUUACUGAAAACCACCGGAACCCAUCA-GAACUCCGAAGUUAAACCA 58 >>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,))))))))) 61 cucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcagg 120 :U ::GC: A:+UAGUACU G+ GGG GACCAC UGGGAA+ :U :GU : G:: 59 GUAUGAGCUUAAUUAGUACUAAGAAGGGAGACCACUUGGGAACGUUGGGU-G--GUA--- 112 : 121 c 121 - - - ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64773,sp|AL353817.1|NC1A9 Neurospora crassa DNA linkage group V Cosmid contig 1A9 ----isReversed: 0 ----hitSequence: ACAUACCAUAGUCACUGGGCCAAAACUCGGGAUCCCGUCCGCUCUCCCUUAGAUCAGCCUGUGACCGCCAGGCUAGUAGUCGGCUCGGUGAUGACCGGUGAACCACCUGGCUUUGUAUGUU hit 116 : 39433 39553 (fwd) 28.49 bits (((((((((,,,,<<-<<<<<-...--<<--<<<<<<_______>>-->>>>-.->>--- 1 ccugGCgGCCAUAGCGagggGG...AAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAA 56 :C:::C AUAG A: GGG AA C C :GA:CCC+UCC G:+CUC: AG U A 39433 ACAUACC---AUAGUCACUGGGccaAAACUCGGGAUCCCGUCC-GCUCUCCCUuAGAUCA 39488 ->>>>>-->><<<-<<----<-<<-----<<____>>----->>->-.->>->>..>,)) 57 GCcccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAu.AgUAGG..UCGC 113 GCC :U A CGCC :: UAGUA++ +G U: GUGA :AC+ G++AA+ A:: GG U 39489 GCCUGUGACCGCCAGGCUAGUAGUCGGCUCGGUGAUGACCGGUGAACcACCUGGcuU-U- 39546 ))))))): 114 uGCcaggc 121 G:::G:+ 39547 -GUAUGUU 39553 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64809,sp|AL669985.1|NC43E3 Neurospora crassa DNA linkage group II Cosmid clone 43E3 ----isReversed: 0 ----hitSequence: ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU hit 117 : 11783 11902 (fwd) 107.54 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUA:C A::GG+AA C C :GA:CCC+UCC G:+CUC: A AG UAAGCC 11783 ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCC-GCUCUCCCAuAGAUAAGCC 11841 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 ::U AG:GCC :: UAGUA+: +GGU:GGUGAC:AC+ G:+AAU :: GGU G:UG:::G 11842 AGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGU-GUUGUAUG 11900 ): 120 gc 121 :+ 11901 UU 11902 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64822,sp|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3 ----isReversed: 0 ----hitSequence: ACAUACGACCAUAGGCACUAGAGAAAACUCGGGAUCCCGUCCGCUCUCCGAUCGAUAAGCCAGUGACCGCCAGGCCAGUAGUCGGCUCGGUGACGACCGGCGAAUCACCUGGUGUUGUAUGUU hit 118 : 40281 40403 (fwd) 73.99 bits (((((((((,,,,<<-<<<<..<---<<--<<<<<<_______>>-->>>>-.->>---- 1 ccugGCgGCCAUAGCGaggg..GGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAG 57 :C:::CG:CCAUAG: A:: G+AA C C :GA:CCC+UCC G:+CUC: A G UAAG 40281 ACAUACGACCAUAGGCACUAgaGAAAACUCGGGAUCCCGUCC-GCUCUCCGAuCGAUAAG 40339 >>>>>-->><<<-<<----<-<<-----<<____>>----->>->-.->>->>>,))))) 58 CcccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAu.AgUAGGUCGCuGC 116 C ::U A:CGCC :: AGUA+: +G U:GGUGAC:AC+ G:+AAU A:: GGU G:UG: 40340 CCAGUGACCGCCAGGCCAGUAGUCGGCUCGGUGACGACCGGCGAAUcACCUGGU-GUUGU 40398 )))): 117 caggc 121 ::G:+ 40399 AUGUU 40403 ----endhit ----fastaFile: /projects/bio/zasha/seqs/embl/fun.dat.fasta.gz ----sequence: #64831,sp|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 ----isReversed: 0 ----hitSequence: ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCAGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGACCAGCGAAUCCCUGGUGUUGUAUGUU hit 119 : 64163 64282 (fwd) 107.54 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-.->>---->> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGA.AGuUAAGCc 59 :C:::CG:CCAUA:C A::GG+AA C C :GA:CCC+UCC G:+CUC: A AG UAAGCC 64163 ACAUACGACCAUACCCACUGGAAAACUCGGGAUCCCGUCC-GCUCUCCCAuAGAUAAGCC 64221 >>>-->><<<-<<----<-<<-----<<____>>----->>->-->>->>>,)))))))) 60 ccucAGCGCCgAuGuAGUACUGcGGUGGGuGACCaCgUGGGAAuAgUAGGUCGCuGCcag 119 ::U AG:GCC :: UAGUA+: +GGU:GGUGAC:AC+ G:+AAU :: GGU G:UG:::G 64222 AGUGAGGGCCAGACUAGUAGUUGGGUCGGUGACGA