>program name
YMF & FindExplanators
>data set
hm01
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm02
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm03
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm04
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Best p-score among the nine motifs is 0.41.
>data set
hm05
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 2. 
First ranked motif AWTNNNNNNNAWA (p=0.00) occurs
24 times in 3 of 3 genes, 21 of the occurrences being in 1 sequence.
Moreover, the chosen motif is better clustered in terms of its position
in the two promoters it occurs in.
>data set
hm06
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm07
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm08
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm09
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm10
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm11
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm12
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm13
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm14
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm15
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm16
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm17
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm18
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm19
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Eight of the 9 motifs have p-score >= 0.40. One of the motifs,
CYCNNNCYC has p=0.00 (occurs 59 times in 5 promoters), but it is
probably a low complexity repeat.
>data set
hm20
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm21
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Best p-score among the nine motifs is 0.26.
>data set
hm22
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 2
Rank of motif in its length category: 2. 
First ranked motif GTGNNNNNNNNCTA (p=0.02) is rejected in 
favour of the second-ranked CACGTG. The latter occurs in the other length 
categories at rank 1 (CACGTGA, length 7) and rank 2 (CACRTGAY, length 8) 
respectively. Hence, CACGTG is chosen, due to its appearence consistently,
for different motif-lengths.
>data set
hm23
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm24
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 2
Rank of motif in its length category: 2. 
First ranked motif CTAAAAC (p=0.07) occurs in 4 promoters,
whereas chosen motif occurs in 6 promoters. Also the chosen motif has a better
(more clustered) distribution in terms of its location in the promoters.
>data set
hm25
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
hm26
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Best p-score among the nine motifs is 0.38.
>data set
mus01
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus02
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus03
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Best p-score among the nine motifs is 0.35.
>data set
mus04
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus05
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus06
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus07
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus08
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Best p-score among the nine motifs is 0.44.
>data set
mus09
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus10
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus11
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
mus12
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm01
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 3
Rank of motif in its length category: 3. 
First ranked motif ARCARCA (p=0.00) is probably a low 
complexity repeat, occurring 42 times in 4 promoters. Second ranked motif
CTATCGA (p=0.00) occurs in 2 promoters, whereas chosen motif occurs in all
four promoters.
>data set
dm02
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm03
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm04
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm05
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm06
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm07
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
dm08
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst01
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst02
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst03
>parameters
YMF-motif-length = 6
YMF-max-spacers = 11
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst04
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst05
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst06
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst07
>parameters
YMF-motif-length = 8
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst08
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 2
Rank of motif in its length category: 2. 
First ranked motif CCGTYGC (p=0.06) occurs in 5 promoters
whereas chosen motif occurs in 9 promoters.
>data set
yst09
>parameters
YMF-motif-length = 7
YMF-max-spacers = 0
YMF-max-RYWS = 2
YMF-min-total-count = 3
YMF-top-how-many = 1000
FindExplanators-maxexplantorswanted = 3
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Rank of motif in its length category: 1
>data set
yst10
>parameters
>preprocessing
Tandem-repeats were masked using Benson's Tandem-Repeat-Finder 
with options "2 5 5 75 20 25 5 -m -d".
(Maximum length of tandem repeats reported is 5.)
>postprocessing
Best p-score among the nine motifs is 0.69.