>program name
mitra

>data set
dm01
>parameters
USE_IUPAC=TRUE
IUPAC_FILENAME=small-iupac-table.txt
USE_HYPERGEOMETRIC_ARRAY_SCORING=TRUE
MIN_HYPERGEOMETRIC_THRESHOLD=5.0
USE_PRIORS=FALSE
PRIORS_FILENAME=REPLACE
PRIOR_LENGTH=6
DYNAMIC_THRESHOLD=FALSE
REPEAT_THRESHOLD=TRUE
REPEAT_MODIFIER=2
PRINT_INSTANCE_SUMMARIES=FALSE
PRINT_SOURCE_NAMES=FALSE
PRINT_POSITION_SUMMARIES=FALSE
NON_ZERO_POSITION_SUMMARIES=TRUE
PRINT_INSTANCES=FALSE
PRINT_INSTANCE_DNA=TRUE
SPACER_SYMBOL=N
PLACEHOLDER_SYMBOL=*
POSITION_INTERVAL=30
QUIET_PRINT_MODE=TRUE
MONAD_LENGTH=6
DISCOVER_DYADS=FALSE
SECOND_LENGTH=6
MIN_DISTANCE=15
MAX_DISTANCE=19
USE_CENTER_DISTANCE=FALSE
CENTER_DISTANCE=17
CENTER_DISTANCE_INTERVAL=1
MAX_MISMATCHES=0
MAX_SPACERS=0
MIN_SIGNAL=1
UNIQUE_SOURCE=FALSE
USE_EDGES=FALSE
INPUT_SYMBOL_FILENAME=harmen-DNA.txt
SOURCE_SYMBOL_FILENAME=array-sources.txt
PRINT_SOURCE_NAMES=FALSE
VERBOSE=FALSE
>preprocessing
Generated positive set (the sequences in
this set) and the negative set all other
sequences for this organism) for
discrimative scoring.
>postprocessing
Filtered for the top 10 highest
hypergeometric scores.
The same parameters, preprocessing and
postprocessing steps were used for all
data sets.