>program name
meme 4.0
Note:
A 5th order Markov background file was made for each organism based
on all of the sample sequences for that organism using
program fasta-get-markov

>data set
dm01
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
dm02
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
dm03
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: none

>data set
dm04
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
dm05
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 5

>data set
dm06
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
dm07
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
dm07
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile dm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile dm.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm01
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm02
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 2

>data set
hm03
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm04
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
hm05
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 2

>data set
hm06
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
hm07
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
hm08
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 3

>data set
hm09
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
hm10
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 3

>data set
hm11
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm12
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
hm13
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 5

>data set
hm14
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm14
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm15
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm16
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 4

>data set
hm17
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 2

>data set
hm18
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: none

>data set
hm19
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 3

>data set
hm20
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 3

>data set
hm21
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 2

>data set
hm22
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 6

>data set
hm23
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
hm24
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 1

>data set
hm25
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 2

>data set
hm26
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile hm.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile hm.bg
>preprocessing
 dust, RepeatMasker
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: 2

>data set
mus01
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing -bfile mus.bg
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus02
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus03
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus04
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus05
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus06
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus07
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus08
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus09
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus10
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus11
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
mus12
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile mus.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile mus.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst01
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst02
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst03
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst04
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst05
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst06
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst07
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst08
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst09
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif:

>data set
yst10
>parameters
Two runs:
	1) -dna -revcomp -mod tcm -maxw 24 -nmotifs 5 -bfile yst.bg
	2) -dna -revcomp -mod zoops -maxw 24 -nmotifs 5 -bfile yst.bg
>preprocessing
 dust
>postprocessing
The ten motifs found were ranked by E-value and evaluated by eye.
Rank of selected motif: