>program
AlignACE

>dataset
yst01
>parameters
background fractional GC content of input sequence = 0.38
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst02
>parameters
background fractional GC content of input sequence = 0.37
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst03
>parameters
background fractional GC content of input sequence = 0.37
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst04
>parameters
background fractional GC content of input sequence = 0.38
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst05
>parameters
background fractional GC content of input sequence = 0.37
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst06
>parameters
background fractional GC content of input sequence = 0.37
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst07
>parameters
background fractional GC content of input sequence = 0.37
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst08
>parameters
background fractional GC content of input sequence = 0.38
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst09
>parameters
background fractional GC content of input sequence = 0.38
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
yst10
>parameters
background fractional GC content of input sequence = 0.38
>preprocessing
none
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm01
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm02
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm03
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm04
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm05
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm06
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm07
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
dm08
>parameters
background fractional GC content of input sequence = 0.43
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus01
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus02
>parameters
background fractional GC content of input sequence = 0.50
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus03
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus04
>parameters
background fractional GC content of input sequence = 0.50
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus05
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus06
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus07
>parameters
background fractional GC content of input sequence = 0.48
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus08
>parameters
background fractional GC content of input sequence = 0.48
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus09
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus10
>parameters
background fractional GC content of input sequence = 0.50
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus11
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
mus12
>parameters
background fractional GC content of input sequence = 0.53
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm01
>parameters
background fractional GC content of input sequence = 0.51
>preprocessing
masked repeats with RepeatMasker

>dataset
hm02
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm03
>parameters
background fractional GC content of input sequence = 0.52
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm04
>parameters
background fractional GC content of input sequence = 0.51
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm05
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm06
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm07
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm08
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm09
>parameters
background fractional GC content of input sequence = 0.52
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm10
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm11
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm12
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm13
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm14
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm15
>parameters
background fractional GC content of input sequence = 0.51
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm16
>parameters
background fractional GC content of input sequence = 0.49
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm17
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm18
>parameters
background fractional GC content of input sequence = 0.49
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm19
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm20
>parameters
background fractional GC content of input sequence = 0.51
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm21
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm22
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm23
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm24
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm25
>parameters
background fractional GC content of input sequence = 0.57
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.

>dataset
hm26
>parameters
background fractional GC content of input sequence = 0.54
>preprocessing
masked repeats with RepeatMasker
>postprocessing
Please see results file for MAP and group specificity score details.